RNA Sequencing and Proteogenomics Reveal the Importance of Leaderless mRNAs in the Radiation-Tolerant Bacterium Deinococcus deserti
出版年份 2014 全文链接
标题
RNA Sequencing and Proteogenomics Reveal the Importance of Leaderless mRNAs in the Radiation-Tolerant Bacterium Deinococcus deserti
作者
关键词
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出版物
Genome Biology and Evolution
Volume 6, Issue 4, Pages 932-948
出版商
Oxford University Press (OUP)
发表日期
2014-04-11
DOI
10.1093/gbe/evu069
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021
- (2013) Jan-Philip Schlüter et al. BMC GENOMICS
- Mapping of Genotype–Phenotype Diversity among Clinical Isolates of Mycobacterium tuberculosis by Sequence-Based Transcriptional Profiling
- (2013) Graham Rose et al. Genome Biology and Evolution
- Proteogenomic Definition of Biomarkers for the Large Roseobacter Clade and Application for a Quick Screening of New Environmental Isolates
- (2013) Joseph Alexander Christie-Oleza et al. JOURNAL OF PROTEOME RESEARCH
- Proteogenomic insights into salt tolerance by a halotolerant alpha-proteobacterium isolated from an Andean saline spring
- (2013) Carolina Rubiano-Labrador et al. Journal of Proteomics
- Major soluble proteome changes in Deinococcus deserti over the earliest stages following gamma-ray irradiation
- (2013) Alain Dedieu et al. Proteome Science
- Comparative proteomics reveals key proteins recruited at the nucleoid ofDeinococcusafter irradiation-induced DNA damage
- (2013) Claire Bouthier de la Tour et al. PROTEOMICS
- RNA at 92°C
- (2013) Claire Toffano-Nioche et al. RNA Biology
- Biology of Extreme Radiation Resistance: The Way of Deinococcus radiodurans
- (2013) A. Krisko et al. Cold Spring Harbor Perspectives in Biology
- Genome-wide Mapping of Transcriptional Start Sites Defines an Extensive Leaderless Transcriptome in Mycobacterium tuberculosis
- (2013) Teresa Cortes et al. Cell Reports
- Multiple-omic data analysis of Klebsiella pneumoniae MGH 78578 reveals its transcriptional architecture and regulatory features
- (2012) Joo-Hyun Seo et al. BMC GENOMICS
- Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
- (2012) H. Thorvaldsdottir et al. BRIEFINGS IN BIOINFORMATICS
- A comparative proteomic approach to better define Deinococcus nucleoid specificities
- (2012) Magali Toueille et al. Journal of Proteomics
- Rfam 11.0: 10 years of RNA families
- (2012) Sarah W. Burge et al. NUCLEIC ACIDS RESEARCH
- MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data
- (2012) David Vallenet et al. NUCLEIC ACIDS RESEARCH
- The Pseudomonas aeruginosa Transcriptome in Planktonic Cultures and Static Biofilms Using RNA Sequencing
- (2012) Andreas Dötsch et al. PLoS One
- Extreme anti-oxidant protection against ionizing radiation in bdelloid rotifers
- (2012) A. Krisko et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
- (2012) C. Kroger et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Leaderless genes in bacteria: clue to the evolution of translation initiation mechanisms in prokaryotes
- (2011) Xiaobin Zheng et al. BMC GENOMICS
- Transcription attenuation in bacteria: theme and variations
- (2011) M. Naville et al. Briefings in Functional Genomics
- DNA binding is essential for PprI function in response to radiation damage in Deinococcus radiodurans
- (2011) Huiming Lu et al. DNA REPAIR
- Death by protein damage in irradiated cells
- (2011) Michael J. Daly DNA REPAIR
- A Major Role for Nonenzymatic Antioxidant Processes in the Radioresistance of Halobacterium salinarum
- (2011) C. K. Robinson et al. JOURNAL OF BACTERIOLOGY
- RtcB Is the RNA Ligase Component of anEscherichia coliRNA Repair Operon
- (2011) Naoko Tanaka et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- cis-Antisense RNA, Another Level of Gene Regulation in Bacteria
- (2011) J. Georg et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Oxidative Stress Resistance in Deinococcus radiodurans
- (2011) D. Slade et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- Intrinsically disordered proteins as molecular shields
- (2011) Sohini Chakrabortee et al. Molecular BioSystems
- Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions
- (2011) Cornelius Schmidtke et al. NUCLEIC ACIDS RESEARCH
- An experimentally anchored map of transcriptional start sites in the model cyanobacteriumSynechocystissp. PCC6803
- (2011) Jan Mitschke et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Deep sequencing-based identification of small non-coding RNAs inStreptomyces coelicolor
- (2011) Michael-Paul Vockenhuber et al. RNA Biology
- Translation initiation: variations in the mechanism can be anticipated
- (2010) Naglis Malys et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Studying bacterial transcriptomes using RNA-seq
- (2010) Nicholas J Croucher et al. CURRENT OPINION IN MICROBIOLOGY
- Cysteine residues exposed on protein surfaces are the dominant intramitochondrial thiol and may protect against oxidative damage
- (2010) Raquel Requejo et al. FEBS Journal
- Structural and operational complexity of the Geobacter sulfurreducens genome
- (2010) Y. Qiu et al. GENOME RESEARCH
- Proximity of the Start Codon to a Leaderless mRNA's 5' Terminus Is a Strong Positive Determinant of Ribosome Binding and Expression in Escherichia coli
- (2010) K. M. Krishnan et al. JOURNAL OF BACTERIOLOGY
- Unstructured Hydrophilic Sequences in Prokaryotic Proteomes Correlate with Dehydration Tolerance and Host Association
- (2010) Anita Kriško et al. JOURNAL OF MOLECULAR BIOLOGY
- The primary transcriptome of the major human pathogen Helicobacter pylori
- (2010) Cynthia M. Sharma et al. NATURE
- Small-Molecule Antioxidant Proteome-Shields in Deinococcus radiodurans
- (2010) Michael J. Daly et al. PLoS One
- Protein damage and death by radiation in Escherichia coli and Deinococcus radiodurans
- (2010) A. Krisko et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Differential expression analysis for sequence count data
- (2010) Simon Anders et al. GENOME BIOLOGY
- A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa
- (2009) Véronique Dupierris et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Next generation sequencing of microbial transcriptomes: challenges and opportunities
- (2009) Arnoud H.M. van Vliet FEMS MICROBIOLOGY LETTERS
- A single-base resolution map of an archaeal transcriptome
- (2009) O. Wurtzel et al. GENOME RESEARCH
- DdrB Protein, an AlternativeDeinococcus radioduransSSB Induced by Ionizing Radiation
- (2009) Cédric A. Norais et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Crystal Structure of the IrrE Protein, a Central Regulator of DNA Damage Repair in Deinococcaceae
- (2009) Andreja Vujičić-Žagar et al. JOURNAL OF MOLECULAR BIOLOGY
- Proteomics-based Refinement ofDeinococcus desertiGenome Annotation Reveals an Unwonted Use of Non-canonical Translation Initiation Codons
- (2009) Mathieu Baudet et al. MOLECULAR & CELLULAR PROTEOMICS
- An Unexpected Type of Ribosomes Induced by Kasugamycin: A Look into Ancestral Times of Protein Synthesis?
- (2009) Anna Chao Kaberdina et al. MOLECULAR CELL
- Mutagenic lesion bypass and two functionally different RecA proteins inDeinococcus deserti
- (2009) Rémi Dulermo et al. MOLECULAR MICROBIOLOGY
- A novel mechanism for translation initiation operates in haloarchaea
- (2009) Oliver Hering et al. MOLECULAR MICROBIOLOGY
- Protein structure prediction on the Web: a case study using the Phyre server
- (2009) Lawrence A Kelley et al. Nature Protocols
- Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity
- (2009) Rotem Sorek et al. NATURE REVIEWS GENETICS
- Deep sequencing analysis of the Methanosarcina mazei Go1 transcriptome in response to nitrogen availability
- (2009) D. Jager et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Begin at the beginning: evolution of translational initiation
- (2009) Dario Benelli et al. RESEARCH IN MICROBIOLOGY
- Alliance of Proteomics and Genomics to Unravel the Specificities of Sahara Bacterium Deinococcus deserti
- (2009) Arjan de Groot et al. PLoS Genetics
- Deinococcus radiodurans: What Belongs to the Survival Kit?
- (2008) Melanie Blasius et al. CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY
- Antioxidant Activity of Proteins and Peptides
- (2008) Ryan J. Elias et al. CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION
- Protein oxidation: key to bacterial desiccation resistance?
- (2008) James K Fredrickson et al. ISME Journal
- Deinococcus radioduransPprI Switches on DNA Damage Response and Cellular Survival Networks after Radiation Damage
- (2008) Huiming Lu et al. MOLECULAR & CELLULAR PROTEOMICS
- Ribosomes bind leaderless mRNA in Escherichia coli through recognition of their 5'-terminal AUG
- (2008) J. E. Brock et al. RNA
- Differentiating Protein-Coding and Noncoding RNA: Challenges and Ambiguities
- (2008) Marcel E. Dinger et al. PLoS Computational Biology
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