标题
Transposable Element Dynamics among Asymbiotic and Ectomycorrhizal Amanita Fungi
作者
关键词
-
出版物
Genome Biology and Evolution
Volume 6, Issue 7, Pages 1564-1578
出版商
Oxford University Press (OUP)
发表日期
2014-06-13
DOI
10.1093/gbe/evu121
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Assembly and comparative analysis of transposable elements from low coverage genomic sequence data in Asparagales
- (2013) Kate L. Hertweck GENOME
- Evolutionary Dynamics of Retrotransposons Assessed by High-Throughput Sequencing in Wild Relatives of Wheat
- (2013) Natacha Senerchia et al. Genome Biology and Evolution
- Population genetics of fungal diseases of plants
- (2013) T. Giraud et al. Parasite
- Sequencing and Comparative Analysis of the Straw Mushroom (Volvariella volvacea) Genome
- (2013) Dapeng Bao et al. PLoS One
- Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm
- (2012) Ari Löytynoja et al. BIOINFORMATICS
- Nonallelic homologous recombination between retrotransposable elements is a driver of de novo unbalanced translocations
- (2012) C. Robberecht et al. GENOME RESEARCH
- Amanita thiersii is a saprotrophic fungus expanding its range in the United States
- (2012) Benjamin E. Wolfe et al. MYCOLOGIA
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics
- (2012) M. Lohse et al. NUCLEIC ACIDS RESEARCH
- Characterization of Transposable Elements in the Ectomycorrhizal Fungus Laccaria bicolor
- (2012) Jessy Labbé et al. PLoS One
- The Irreversible Loss of a Decomposition Pathway Marks the Single Origin of an Ectomycorrhizal Symbiosis
- (2012) Benjamin E. Wolfe et al. PLoS One
- Comparative Analysis of the Genomes of Two Field Isolates of the Rice Blast Fungus Magnaporthe oryzae
- (2012) Minfeng Xue et al. PLoS Genetics
- How does selfing affect the dynamics of selfish transposable elements?
- (2012) Thibaud S Boutin et al. Mobile DNA
- ProtTest 3: fast selection of best-fit models of protein evolution
- (2011) Diego Darriba et al. BIOINFORMATICS
- The struggle for life of the genome's selfish architects
- (2011) Aurélie Hua-Van et al. Biology Direct
- A Secreted Effector Protein of Laccaria bicolor Is Required for Symbiosis Development
- (2011) Jonathan M. Plett et al. CURRENT BIOLOGY
- Mutualistic interactions on a knife-edge between saprotrophy and pathogenesis
- (2011) Claire Veneault-Fourrey et al. CURRENT OPINION IN PLANT BIOLOGY
- Genome Size and Transposable Element Content as Determined by High-Throughput Sequencing in Maize and Zea luxurians
- (2011) Maud I. Tenaillon et al. Genome Biology and Evolution
- Dynamic interactions between transposable elements and their hosts
- (2011) Henry L. Levin et al. NATURE REVIEWS GENETICS
- Considering Transposable Element Diversification in De Novo Annotation Approaches
- (2011) Timothée Flutre et al. PLoS One
- LTR Retrotransposons in Fungi
- (2011) Anna Muszewska et al. PLoS One
- Obligate biotrophy features unraveled by the genomic analysis of rust fungi
- (2011) S. Duplessis et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Selfish genetic elements, genetic conflict, and evolutionary innovation
- (2011) J. H. Werren PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations
- (2011) Thierry Rouxel et al. Nature Communications
- Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
- (2011) Daniel Aird et al. GENOME BIOLOGY
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- A Brief History of the Status of Transposable Elements: From Junk DNA to Major Players in Evolution
- (2010) C. Biemont GENETICS
- Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis
- (2010) Francis Martin et al. NATURE
- Limitations of next-generation genome sequence assembly
- (2010) Can Alkan et al. NATURE METHODS
- High-quality draft assemblies of mammalian genomes from massively parallel sequence data
- (2010) S. Gnerre et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- DNA transposon dynamics in populations of Daphnia pulex with and without sex
- (2010) S. Schaack et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism
- (2010) P. D. Spanu et al. SCIENCE
- Evolution of Linked Avirulence Effectors in Leptosphaeria maculans Is Affected by Genomic Environment and Exposure to Resistance Genes in Host Plants
- (2010) Angela P. Van de Wouw et al. PLoS Pathogens
- DNA transposons and the role of recombination in mutation accumulation in Daphnia pulex
- (2010) Sarah Schaack et al. GENOME BIOLOGY
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Epigenetic silencing of transposable elements: A trade-off between reduced transposition and deleterious effects on neighboring gene expression
- (2009) J. D. Hollister et al. GENOME RESEARCH
- ABySS: A parallel assembler for short read sequence data
- (2009) J. T. Simpson et al. GENOME RESEARCH
- Are true multihost fungi the exception or the rule? Dominant ectomycorrhizal fungi on Pinus sabiniana differ from those on co-occurring Quercus species
- (2009) Matthew E. Smith et al. NEW PHYTOLOGIST
- Coevolution between a Family of Parasite Virulence Effectors and a Class of LINE-1 Retrotransposons
- (2009) Soledad Sacristán et al. PLoS One
- The B73 Maize Genome: Complexity, Diversity, and Dynamics
- (2009) P. S. Schnable et al. SCIENCE
- LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
- (2008) David Ellinghaus et al. BMC BIOINFORMATICS
- Non-LTR retrotransposons in fungi
- (2008) Olga Novikova et al. FUNCTIONAL & INTEGRATIVE GENOMICS
- Evidence for strong inter- and intracontinental phylogeographic structure in Amanita muscaria, a wind-dispersed ectomycorrhizal basidiomycete
- (2008) József Geml et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
- (2008) F. Martin et al. NATURE
- TheLaccariagenome: a symbiont blueprint decoded
- (2008) Francis Martin et al. NEW PHYTOLOGIST
- Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
- (2008) J. C. Dohm et al. NUCLEIC ACIDS RESEARCH
- Demography and weak selection drive patterns of transposable element diversity in natural populations of Arabidopsis lyrata
- (2008) S. Lockton et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Rapid Bootstrap Algorithm for the RAxML Web Servers
- (2008) Alexandros Stamatakis et al. SYSTEMATIC BIOLOGY
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started