4.7 Article

Evidence for strong inter- and intracontinental phylogeographic structure in Amanita muscaria, a wind-dispersed ectomycorrhizal basidiomycete

期刊

MOLECULAR PHYLOGENETICS AND EVOLUTION
卷 48, 期 2, 页码 694-701

出版社

ACADEMIC PRESS INC ELSEVIER SCIENCE
DOI: 10.1016/j.ympev.2008.04.029

关键词

Amanita muscaria; beta-tubulin gene; fungi; internal transcribed spacer region; phylogeography; ribosomal large subunit gene; translation elongation factor 1-alpha gene

向作者/读者索取更多资源

A growing number of molecular studies show that many fungi have phylogeographic structures and that their distinct lineages are usually limited to different continents. As a conservative test of the extent to which wind-dispersed mycorrhizal fungi may exhibit phylogeographic structure, we chose to study Amanita muscaria, a host-generalist, widespread, wind-dispersed fungus. In this paper, we document the existence of several distinct phylogenetic species within A. muscaria, based on multilocus DNA sequence data. According to our findings, A. muscarla has strong intercontinental genetic disjunctions, and, more surprisingly, has strong intracontinental phylogeographic structure, particularly within North America, often corresponding to certain habitats and/or biogeographic provinces. Our results indicate that the view of A. muscarla as a common, widespread, easily identifiable, ecologically plastic fungus with a wide niche does not correctly represent the ecological and biological realities. On the contrary, the strong associations between phylogenetic species and different habitats support the developing picture of ecoregional endemisms and relatively narrow to very narrow niches for some lineages. (c) 2008 Elsevier Inc. All rights reserved.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Review Mycology

Trends in yeast diversity discovery

Teun Boekhout, Anthony S. Amend, Fouad El Baidouri, Toni Gabaldon, Jozsef Geml, Moritz Mittelbach, Vincent Robert, Chen Shuhui Tan, Benedetta Turchetti, Duong Vu, Qi-Ming Wang, Andrey Yurkov

Summary: Yeast, defined as unicellular fungi, are found in various fungal lineages and are not a taxonomic unit; it may take hundreds of years to fully document all yeast species. Many areas, including cold habitats and threatened environments, remain unsampled for yeasts. Studies have shown hybrid yeast species, prevalent yeast communities in natural habitats impacted by deforestation, and surprising global distributions of yeast species in soils and marine waters.

FUNGAL DIVERSITY (2022)

Article Biochemistry & Molecular Biology

Community dynamics of soil-borne fungal communities along elevation gradients in neotropical and palaeotropical forests

Jozsef Geml, Anne Elizabeth Arnold, Tatiana A. Semenova-Nelsen, Eduardo R. Nouhra, Elisandro R. Drechsler-Santos, Aristoteles Goes-Neto, Luis N. Morgado, Peter Odor, Balazs Hegyi, Grau Oriol, Alicia Ibanez, Leho Tedersoo, Francois Lutzoni

Summary: Mountains provide an ideal setting to study the mechanisms underlying species distributions and community assembly. This study compared the composition and diversity of fungal communities in soils along elevational gradients in different tropical mountain regions. The results showed that the richness and composition of soil fungal communities were influenced by environmental factors, particularly temperature and soil pH. The distribution of host plants also played a role in driving richness and community composition, especially for fungi that depend on symbiosis with plants. The study suggests that tropical montane forest fungi will be sensitive to climate change, leading to shifts in composition and functionality over time.

MOLECULAR ECOLOGY (2022)

Article Biochemistry & Molecular Biology

Epiphytic fungal communities vary by substrate type and at submetre spatial scales

Kel Cook, Jyotsna Sharma, Andrew D. Taylor, Ian Herriott, D. Lee Taylor

Summary: This study explored the spatial structure and substrate specificity of fungal communities in the canopy of a Costa Rican tropical rainforest. The results showed significant positive spatial autocorrelation and distance decay of similarity of fungal communities at small scales, with high turnover and low similarity among samples. The composition and diversity of fungal communities varied among substrate types.

MOLECULAR ECOLOGY (2022)

Article Plant Sciences

The Compositional Turnover of Grapevine-Associated Plant Pathogenic Fungal Communities Is Greater Among Intraindividual Microhabitats and Terroirs than Among Healthy and Esca-Diseased Plants

Adrienn Geiger, Zoltan Karacsony, Richard Golen, Kalman Zoltan Vaczy, Jozsef Geml

Summary: Grapevine trunk diseases (GTDs) pose a significant threat to the wine industry, and understanding the differences in plant pathogenic fungal communities in asymptomatic and symptomatic grapevines is crucial. This study found that GTD-associated fungi dominate in perennial wood while non-GTD pathogens dominate in soil, and there were no significant differences between asymptomatic and Esca symptomatic grapevines. Additionally, there were compositional differences among sampling sites, suggesting the importance of local factors on plant pathogenic fungal communities.

PHYTOPATHOLOGY (2022)

Article Plant Sciences

Nitrogen pulses increase fungal pathogens in Amazonian lowland tropical rain forests

Erika Buscardo, Jozsef Geml, Steven K. Schmidt, Helena Freitas, Anete P. Souza, Hillandia B. Cunha, Laszlo Nagy

Summary: This study quantified the relationship between soil mineral nitrogen availability, fungal community composition, and functional groups in an Amazon rainforest. The findings suggest that animal excretions, which create high-nitrogen patches, contribute to soil microbial diversity and plant community diversity.

JOURNAL OF ECOLOGY (2022)

Article Multidisciplinary Sciences

Metabarcoding analysis of the soil fungal community to aid the conservation of underexplored church forests in Ethiopia

Demelash Alem, Tatek Dejene, Jozsef Geml, Juan Andres Oria-de-Rueda, Pablo Martin-Pinto

Summary: This study assessed soil fungal communities in three church forests in Ethiopia using ITS2 rDNA metabarcoding. The results revealed significant differences in diversity and richness among the forests, and the composition of fungal communities was influenced by climatic, edaphic, vegetation, and spatial variables. Linear relationships were found between tree basal area and the abundance of fungal communities. The baseline information obtained in this study could assist other countries facing similar forest conservation issues.

SCIENTIFIC REPORTS (2022)

Article Microbiology

Metatranscriptomic Analyses Reveal the Functional Role of Botrytis cinerea in Biochemical and Textural Changes during Noble Rot of Grapevines

Adam Istvan Hegyi, Margot Otto, Jozsef Geml, Julia Hegyi-Kalo, Jozsef Kun, Attila Gyenesei, Rian Pierneef, Kalman Zoltan Vaczy

Summary: This study analyzed the gene expression data during the noble rot process in grapes, revealing the important genes for grape berry structural integrity and the dominant role of Botrytis cinerea in this process.

JOURNAL OF FUNGI (2022)

Article Plant Sciences

Exploring Relationships among Grapevine Chemical and Physiological Parameters and Leaf and Berry Mycobiome Composition

Anna Molnar, Jozsef Geml, Adrienn Geiger, Carla Mota Leal, Glodia Kgobe, Adrienn Maria Toth, Szabolcs Villango, Lili Mezes, Mark Czegledi, Gyorgy Lorincz, Zsolt Zsofi

Summary: Improving our understanding of the grapevine mycobiome and its influencing factors is crucial for agriculture. This study examines the impact of scion cultivar on fungal communities in grapevine berries and leaves, finding that both chemical composition and physiological traits of the plant influence the composition and diversity of these communities. The findings also highlight differences in fungal community composition among cultivars, as well as correlations between fungal community composition and physiological variables in leaves, suggesting a complex interaction between the plant and its microbial environment.

PLANTS-BASEL (2022)

Article Microbiology

Agaricus macrochlamys, a New Species from the (Sub)tropical Cloud Forests of North America and the Caribbean, and Agaricus fiardii, a New Synonym of Agaricus subrufescens

Rosario Medel-Ortiz, Roberto Garibay-Orijel, Andres Arguelles-Moyao, Gerardo Mata, Richard W. Kerrigan, Alan E. Bessette, Jozsef Geml, Claudio Angelini, Luis A. Parra, Jie Chen

Summary: In this study, a new species, Agaricus macrochlamys, was described, which is morphologically cryptic with the edible and medicinally cultivated mushroom A. subrufescens. Phylogenetic analyses showed a close relationship between A. macrochlamys and A. subrufescens, with species-specific markers distinguishing them. Additionally, while A. subrufescens is cosmopolitan, A. macrochlamys is currently limited in distribution.

JOURNAL OF FUNGI (2022)

Article Biotechnology & Applied Microbiology

Botrytis cinerea expression profile and metabolism differs between noble and grey rot of grapes

Margot Otto, Jozsef Geml, Adam Hegyi, Julia Hegyi-Kalo, Rian Pierneef, Miklos Pogany, Jozsef Kun, Attila Gyenesei, Kalman Z. Vaczy

Summary: This study analyzed transcriptomic data from healthy, noble rot, and grey rot grape berries collected in the Tokaj wine region in Hungary. The results showed that B. cinerea was most active in noble rot berries, followed by grey rot and healthy berries. The expression profiles also differed qualitatively between noble rot and grey rot, with several functional genes linked to physico-chemical changes in botrytized grape berries.

FOOD MICROBIOLOGY (2022)

Article Forestry

Influence of stand age and site conditions on ectomycorrhizal fungal dynamics in Cistus ladanifer-dominated scrubland ecosystems

Pablo Martin-Pinto, Juan Andres Oria-de-Rueda, Tatek Dejene, Olaya Mediavilla, Maria Hernandez-Rodriguez, Jose A. Reque, Ignacio Sanz-Benito, Maria Santos, Jozsef Geml

Summary: Cistus ladanifer-dominated ecosystems in the Western Mediterranean basin have significant ecological benefits through mushroom production. The soil fungal community in these ecosystems is influenced by stand age, climate, and soil parameters. Understanding these factors can aid in restoring and promoting fungal diversity, production, and function in these scrubland systems. Mosaic landscapes and retaining late successional stands are important management strategies to support fungal diversity in these ecosystems.

FOREST ECOLOGY AND MANAGEMENT (2022)

Review Ecology

Wildfire impacts on root-associated fungi and predicted plant-soil feedbacks in the boreal forest: Research progress and recommendations

Rebecca E. Hewitt, Nicola J. Day, M. Rae DeVan, D. Lee Taylor

Summary: Root-associated fungi are crucial for plant ecophysiology, growth, and post-fire responses in the boreal forest. Understanding the impacts of wildfires on mycorrhizal fungi and plant-fungal interactions is important for predicting vegetation patterns, ecosystem function, and future fire risk.

FUNCTIONAL ECOLOGY (2023)

Article Biodiversity Conservation

Global patterns in endemicity and vulnerability of soil fungi

Leho Tedersoo, Vladimir Mikryukov, Alexander Zizka, Mohammad Bahram, Niloufar Hagh-Doust, Sten Anslan, Oleh Prylutskyi, Manuel Delgado-Baquerizo, Fernando T. Maestre, Jaan Parn, Maarja Opik, Mari Moora, Martin Zobel, Mikk Espenberg, Ulo Mander, Abdul Nasir Khalid, Adriana Corrales, Ahto Agan, Aida-M Vasco-Palacios, Alessandro Saitta, Andrea C. Rinaldi, Annemieke Verbeken, Bobby P. Sulistyo, Boris Tamgnoue, Brendan Furneaux, Camila Duarte Ritter, Casper Nyamukondiwa, Cathy Sharp, Cesar Marin, Daniyal Gohar, Darta Klavina, Dipon Sharmah, Dong Qin Dai, Eduardo Nouhra, Elisabeth Machteld Biersma, Elisabeth Rahn, Erin K. Cameron, Eske De Crop, Eveli Otsing, Evgeny A. Davydov, Felipe E. Albornoz, Francis Q. Brearley, Franz Buegger, Geoffrey Zahn, Gregory Bonito, Inga Hiiesalu, Isabel C. Barrio, Jacob Heilmann-Clausen, Jelena Ankuda, John Y. Kupagme, Jose G. Macia-Vicente, Joseph Djeugap Fovo, Jozsef Geml, Juha M. Alatalo, Julieta Alvarez-Manjarrez, Kadri Poldmaa, Kadri Runnel, Kalev Adamson, Kari Anne Brathen, Karin Pritsch, Kassim Tchan, Kevin D. Hyde, Kevin K. Newsham, Kristel Panksep, Adebola A. Lateef, Liis Tiirmann, Linda Hansson, Louis J. Lamit, Malka Saba, Maria Tuomi, Marieka Gryzenhout, Marijn Bauters, Meike Piepenbring, Nalin Wijayawardene, Nourou S. Yorou, Olavi Kurina, Peter E. Mortimer, Peter Meidl, Petr Kohout, Rolf Henrik Nilsson, Rasmus Puusepp, Rein Drenkhan, Roberto Garibay-Orijel, Roberto Godoy, Saad Alkahtani, Saleh Rahimlou, Sergey Dudov, Sergei Polme, Soumya Ghosh, Sunil Mundra, Talaat Ahmed, Tarquin Netherway, Terry W. Henkel, Tomas Roslin, Vincent Nteziryayo, Vladimir E. Fedosov, Vladimir G. Onipchenko, W. A. Erandi Yasanthika, Young Woon Lim, Nadejda A. Soudzilovskaia, Alexandre Antonelli, Urmas Koljalg, Kessy Abarenkov

Summary: Fungi are highly diverse organisms that play important roles in ecosystems. However, their distribution patterns and conservation needs are not well studied compared to charismatic animals and plants. This study examined endemicity patterns, vulnerability to global change, and conservation priority areas for functional groups of soil fungi. The study found that most fungi are endemic to tropical habitats and are vulnerable to drought, heat, and land-cover change. Conservation areas of highest priority for fungi include wetlands, tropical forests, and woodlands.

GLOBAL CHANGE BIOLOGY (2022)

Article Ecology

High diversity and low specificity of fungi associated with seedless epiphytic plants

Kel Cook, D. Lee Taylor

Summary: Epiphytes, which grow on other plants for support, harbor diverse fungal communities on their surfaces and interiors that can benefit or harm their hosts. However, our understanding of these fungal communities and their structure is limited. By studying seven epiphytic plant taxa in a Costa Rican rainforest, we found that the fungi associated with these plants were not highly specific to host species and showed weak differentiation between epiphytic and neighboring plant hosts on rocks. The high turnover of fungi within and between hosts and habitats suggests that epiphytic plant-associated fungal communities are highly diverse and likely structured by stochastic processes.

BIOTROPICA (2023)

Article Environmental Sciences

Co-responses of bacterial and fungal communities to fire management treatments in Mediterranean pyrophytic ecosystems

Pablo Martin-Pinto, Tatek Dejene, Gian Maria Niccolo Benucci, Olaya Mediavilla, Maria Hernandez-Rodriguez, Jozsef Geml, Petr Baldrian, Ignacio Sanz-Benito, Jaime Olaizola, Gregory Bonito, Juan Andres Oria-de-Rueda

Summary: This study investigates the effects of different fire prevention treatments and site history on the co-response and co-occurrence patterns of bacteria and fungi in a fire-risky scrubland ecosystem. The results show that site history, especially fire occurrence, strongly influences the microbial community. Young burnt areas have lower microbial diversity and a heat-resistant community, while young clearing history affects the fungal community.

SCIENCE OF THE TOTAL ENVIRONMENT (2023)

Article Biochemistry & Molecular Biology

Paraphyly and cryptic diversity unveils unexpected challenges in the naked lichens (Calvitimela, Lecanoromycetes, Ascomycota)

Markus Osaland Fjelde, Einar Timdal, Reidar Haugan, Mika Bendiksby

Summary: This study investigated the taxonomy of the crustose lichen genus Calvitimela using molecular phylogenetics and morphological observations. The results revealed evolutionarily old and deeply divergent lineages within Calvitimela, with overlapping morphological characters between different subgenera. Chemical characters were informative at the level of subgenera but often homoplastic at the species level. A practical taxonomy of Calvitimela was proposed based on these findings.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Diversification of freshwater crabs on the sky islands in the Hengduan Mountains Region, China

Bo-Yang Shi, Da Pan, Kang-Qin Zhang, Tian-Yu Gu, Darren C. J. Yeo, Peter K. L. Ng, Neil Cumberlidge, Hong-Ying Sun

Summary: This study investigates the evolutionary history and speciation mechanisms of montane potamids in the Hengduan Mountains Region. The results suggest that the vicariance events of these crabs are correlated with the emergence of sky islands due to the uplift of the mountains. The mountain ridges provided corridors for their dispersal and past climatic conditions played a crucial role in their evolutionary history. The mechanisms isolating sky islands are reinforced by the climatic features of dry-hot valleys and continue to affect local diversification.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Evolutionary history and systematics of European blind mole rats (Rodentia: Spalacidae: Nannospalax): Multilocus phylogeny and species delimitation in a puzzling group

Attila Nemeth, Edvard Mizsei, Levente Laczko, David Czaban, Zsolt Hegyeli, Szabolcs Lengyel, Gabor Csorba, Gabor Sramko

Summary: Species delimitation of European blind mole rats is challenging due to their small morphological differences and complex chromosomal evolution. This study provides a comprehensive framework to improve understanding of their evolutionary history and revise their taxonomy. The results reveal the presence of multiple superspecies and species, with distinct geographic patterns and rapid chromosomal evolution.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Phylogenomic analyses reveal a single deep-water colonisation in Patellogastropoda

Ying Qi, Zhaoyan Zhong, Xu Liu, Xing He, Yadong Zhou, Lili Zhang, Chong Chen, Katrin Linse, Jian-Wen Qiu, Jin Sun

Summary: This study investigates the phylogenetic relationships among patellogastropod families using mitochondrial and phylogenomic data. The results show that the mitochondrial phylogeny recovers monophyly of most families, but the relationships among families are still contentious. However, a more robust family-level topology consistent with morphology is achieved by phylogenomics. Additionally, the mainly deep-water families are found to be monophyletic, suggesting a single colonization of the deep water during the Jurassic.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

A model of hybrid speciation process drawn from three new poplar species originating from distant hybridization between sections

Yu-Jie Shi, Jin -Liang Huang, Jia-Xuan Mi, Jing Li, Fan-Yu Meng, Yu Zhong, Fang He, Fei -Fei Tian, Fan Zhang, Liang-Hua Chen, Han-Bo Yang, Hong-Lin Hu, Xue-Qin Wan

Summary: Despite numerous studies on hybrid speciation, our understanding of this process remains limited. In this study, we conducted an 18-year systematic investigation on Populus taxa on the Qinghai-Tibet Plateau and discovered three new taxa that originated from distant hybridization between two different sections. These hybrid taxa demonstrate greater ecological adaptability than their ancestral species due to heterosis. We propose a hybrid speciation process model that can explain important evolutionary concerns.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Phylogenomic position of genetically diverse phagotrophic stramenopile flagellates in the sediment-associated MAST-6 lineage and a potentially halotolerant placididean

Anna Cho, Denis Tikhonenkov, Gordon Lax, Kristina I. Prokina, Patrick J. Keeling

Summary: Unlike conspicuous ochrophytes, many small and overlooked flagellates belonging to basally branching stramenopiles remain poorly characterized at the cellular or genomic level. This study describes four new species, including two new genera, of sediment-dwelling MAST-6 and provides updated phylogenomic tree of stramenopiles. The characterization of these flagellates is important due to their phylogenetic diversity and abundance in various environments.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Phylogenomic conflict analyses of the plastid and mitochondrial genomes via deep genome skimming highlight their independent evolutionary histories: A case study in the cinquefoil genus Potentilla sensu lato (Potentilleae, Rosaceae)

Tian-Tian Xue, Steven B. Janssens, Bin-Bin Liu, Sheng-Xiang Yu

Summary: Phylogenomic conflicts are widespread among genomic data, with most previous studies primarily focusing on nuclear datasets instead of organellar genomes. In this study, we investigated the phylogenetic conflicts within and between plastid and mitochondrial genomes using Potentilla as a case study. We found that both plastid and mitochondrial genomes divided Potentilla into eight highly supported clades, with two newly identified clades. Our results demonstrate that mitochondrial genes can fully resolve phylogenetic relationships among major clades of Potentilla and are not always linked with plastomes in evolutionary history.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Co-phylogeny of a hyper-symbiotic system: Endosymbiotic bacteria (Gammaproteobacteria), chewing lice (Insecta: Phthiraptera) and birds (Passeriformes)

Alexandra A. Grossi, Chunpo Tian, Mengjiao Ren, Fasheng Zou, Daniel R. Gustafsson

Summary: This study suggests that the coevolutionary relationships between chewing lice, endosymbiotic bacteria, and birds are not independent, but the patterns vary depending on the analysis method used. Additionally, louse host-switching does not seem to affect bacterial strains.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)

Article Biochemistry & Molecular Biology

Hyper-Cryptic radiation of a tropical montane plant lineage

Ingrid Olivares, Sergio Tusso, Maria Jose Sanin, Marylaure de La Harpe, Oriane Loiseau, Jonathan Rolland, Nicolas Salamin, Michael Kessler, Kentaro K. Shimizu, Margot Paris

Summary: Traditionally, differences between species have been associated with morphological variation. However, the discovery of cryptic diversity suggests that the evolution of distinct lineages can occur without morphological differences. Through genetic analysis, we found that a tropical montane plant lineage is composed of numerous unrecognized genetic groups that are not morphologically distinct. Geographic distance and topography play a crucial role in determining the genetic divergence of these groups.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2024)