Intestinal microbiota in human health and disease: the impact of probiotics

Mycobacterium Avium Paratuberculosisand the Etiology of Crohn’s Disease: A Review of the Controversy from the Clinician’s Perspective

(2016) Greg Rosenfeld et al.   CANADIAN JOURNAL OF GASTROENTEROLOGY

Microarray Analysis and Barcoded Pyrosequencing Provide Consistent Microbial Profiles Depending on the Source of Human Intestinal Samples

(2011) Bartholomeus van den Bogert et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

An iterative workflow for mining the human intestinal metaproteome

(2011) Koos Rooijers et al.   BMC GENOMICS

High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease

(2011) Alan W Walker et al.   BMC MICROBIOLOGY

An Assessment of Bacterial Dysbiosis in Pouchitis Using Terminal Restriction Fragment Length Polymorphisms of 16S Ribosomal DNA From Pouch Effluent Microbiota

(2011) Michael Lim et al.   DISEASES OF THE COLON & RECTUM

Health benefits of probiotics: are mixtures more effective than single strains?

(2011) C. M. C. Chapman et al.   EUROPEAN JOURNAL OF NUTRITION

Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives

(2011) M. Joossens et al.   GUT

COMPANION ANIMALS SYMPOSIUM: Development of the mammalian gastrointestinal tract, the resident microbiota, and the role of diet in early life1

(2011) R. K. Buddington et al.   JOURNAL OF ANIMAL SCIENCE

Metatranscriptomic Approach to Analyze the Functional Human Gut Microbiota

(2011) María José Gosalbes et al.   PLoS One

Intestinal microbiota in inflammatory bowel disease: Friend of foe?

(2011) Francesca Fava   WORLD JOURNAL OF GASTROENTEROLOGY

Gut microbiome-host interactions in health and disease

(2011) James M Kinross et al.   Genome Medicine

Effect of mother’s weight on infant’s microbiota acquisition, composition, and activity during early infancy: a prospective follow-up study initiated in early pregnancy

(2010) Maria Carmen Collado et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Pyrosequencing study of fecal microflora of autistic and control children

(2010) Sydney M. Finegold et al.   ANAEROBE

A distinctive 'microbial signature' in celiac pediatric patients

(2010) Serena Schippa et al.   BMC MICROBIOLOGY

Intestinal dysbiosis and reduced immunoglobulin-coated bacteria associated with coeliac disease in children

(2010) Giada De Palma et al.   BMC MICROBIOLOGY

Identification of Lactobacillus plantarum genes modulating the cytokine response of human peripheral blood mononuclear cells

(2010) Saskia van Hemert et al.   BMC MICROBIOLOGY

Impact of a synbiotic food on the gut microbial ecology and metabolic profiles

(2010) Beatrice Vitali et al.   BMC MICROBIOLOGY

Gut microbiota composition is associated with body weight, weight gain and biochemical parameters in pregnant women

(2010) A. Santacruz et al.   BRITISH JOURNAL OF NUTRITION

Prebiotic effects: metabolic and health benefits

(2010) Marcel Roberfroid et al.   BRITISH JOURNAL OF NUTRITION

Enterobacteriaceae Act in Concert with the Gut Microbiota to Induce Spontaneous and Maternally Transmitted Colitis

(2010) Wendy S. Garrett et al.   Cell Host & Microbe

Strain-specific immunomodulatory effects ofLactobacillus plantarumstrains on birch-pollen-allergic subjects out of season

(2010) J. Snel et al.   CLINICAL AND EXPERIMENTAL ALLERGY

Therapeutical use of probiotic formulations in clinical practice

(2010) T. Iannitti et al.   CLINICAL NUTRITION

Molecular Characterisation of the Faecal Microbiota in Patients with Type II Diabetes

(2010) Xiaokang Wu et al.   CURRENT MICROBIOLOGY

The role of mucosal immunity and host genetics in defining intestinal commensal bacteria

(2010) Jonathan Hansen et al.   CURRENT OPINION IN GASTROENTEROLOGY

The intestinal microbiota in inflammatory bowel diseases: time to connect with the host

(2010) Harry Sokol et al.   CURRENT OPINION IN GASTROENTEROLOGY

An update on irritable bowel syndrome: from diagnosis to emerging therapies

(2010) Joseph Y Chang et al.   CURRENT OPINION IN GASTROENTEROLOGY

Obesity, Diabetes, and Gut Microbiota: The hygiene hypothesis expanded?

(2010) G. Musso et al.   DIABETES CARE

The environment within: how gut microbiota may influence metabolism and body composition

(2010) A. Vrieze et al.   DIABETOLOGIA

High temporal and inter-individual variation detected in the human ileal microbiota

(2010) Carien C. G. M. Booijink et al.   ENVIRONMENTAL MICROBIOLOGY

Differential effects ofLactobacillus acidophilusandLactobacillus plantarumstrains on cytokine induction in human peripheral blood mononuclear cells

(2010) Yvonne M. Vissers et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Lactobacillus strains differentially modulate cytokine production by hPBMC from pollen-allergic patients

(2010) Yvonne M. Vissers et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes

(2010) L. Tasse et al.   GENOME RESEARCH

Composition and energy harvesting capacity of the gut microbiota: relationship to diet, obesity and time in mouse models

(2010) E F Murphy et al.   GUT

Dysbiosis of fecal microbiota in Crohnʼs disease patients as revealed by a custom phylogenetic microarray

(2010) Seungha Kang et al.   INFLAMMATORY BOWEL DISEASES

Distinct microbiome in pouchitis compared to healthy pouches in ulcerative colitis and familial adenomatous polyposis

(2010) Garrett C. Zella et al.   INFLAMMATORY BOWEL DISEASES

Highlighting new phylogenetic specificities of Crohnʼs disease microbiota

(2010) S. Mondot et al.   INFLAMMATORY BOWEL DISEASES

Distinct Bifidobacterium strains drive different immune responses in vitro

(2010) Patricia López et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

The effect of Pediococcus acidilactici on the gut microbiota and immune status of on-growing red tilapia (Oreochromis niloticus)

(2010) R.M.W. Ferguson et al.   JOURNAL OF APPLIED MICROBIOLOGY

Interactomics in the Human Intestine

(2010) Rolf J. Boesten et al.   JOURNAL OF CLINICAL GASTROENTEROLOGY

Molecular analysis of faecal and duodenal samples reveals significantly higher prevalence and numbers of Pseudomonas aeruginosa in irritable bowel syndrome

(2010) A. P. M. Kerckhoffs et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: Effective recovery of bacterial and archaeal DNA using mechanical cell lysis

(2010) Anne Salonen et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Guidance for Substantiating the Evidence for Beneficial Effects of Probiotics: Current Status and Recommendations for Future Research

(2010) Ger T. Rijkers et al.   JOURNAL OF NUTRITION

Dietary Modulation of Gut Functional Ecology Studied by Fecal Metabonomics

(2010) Francois-Pierre J. Martin et al.   JOURNAL OF PROTEOME RESEARCH

Gastrointestinal microbiota in irritable bowel syndrome: present state and perspectives

(2010) A. Salonen et al.   MICROBIOLOGY-SGM

Longitudinal investigation of the faecal microbiota of healthy full-term infants using fluorescence in situ hybridization and denaturing gradient gel electrophoresis

(2010) L. C. Roger et al.   MICROBIOLOGY-SGM

Examination of faecal Bifidobacterium populations in breast- and formula-fed infants during the first 18 months of life

(2010) L. C. Roger et al.   MICROBIOLOGY-SGM

Long-term impacts of antibiotic exposure on the human intestinal microbiota

(2010) C. Jernberg et al.   MICROBIOLOGY-SGM

Drug metabolome of the Simvastatin formed by human intestinal microbiota in vitro

(2010) Anna-Marja Aura et al.   Molecular BioSystems

The impact of pre- and/or probiotics on human colonic metabolism: Does it affect human health?

(2010) Vicky De Preter et al.   MOLECULAR NUTRITION & FOOD RESEARCH

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Probiotics and the gut microbiota in intestinal health and disease

(2010) Mélanie G. Gareau et al.   Nature Reviews Gastroenterology & Hepatology

Gut Microbiota in Health and Disease

(2010) Inna Sekirov et al.   PHYSIOLOGICAL REVIEWS

Lactobacillus casei Abundance Is Associated with Profound Shifts in the Infant Gut Microbiome

(2010) Michael J. Cox et al.   PLoS One

Gut Microbiota in Human Adults with Type 2 Diabetes Differs from Non-Diabetic Adults

(2010) Nadja Larsen et al.   PLoS One

Identification of Genetic Loci in Lactobacillus plantarum That Modulate the Immune Response of Dendritic Cells Using Comparative Genome Hybridization

(2010) Marjolein Meijerink et al.   PLoS One

Through Ageing, and Beyond: Gut Microbiota and Inflammatory Status in Seniors and Centenarians

(2010) Elena Biagi et al.   PLoS One

Regional Mucosa-Associated Microbiota Determine Physiological Expression of TLR2 and TLR4 in Murine Colon

(2010) Yunwei Wang et al.   PLoS One

Bifidobacterium animalis subsp. lactis fermented milk product reduces inflammation by altering a niche for colitogenic microbes

(2010) P. Veiga et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gut microbiota in obesity and metabolic disorders

(2010) Yolanda Sanz et al.   PROCEEDINGS OF THE NUTRITION SOCIETY

A Catalog of Reference Genomes from the Human Microbiome

(2010) et al.   SCIENCE

Association of symptoms with gastrointestinal microbiota in irritable bowel syndrome

(2010) Erja Malinen   WORLD JOURNAL OF GASTROENTEROLOGY

Current insights in to the pathophysiology of Irritable Bowel Syndrome

(2010) Theodoros Karantanos et al.   Gut Pathogens

Luminal and mucosal-associated intestinal microbiota in patients with diarrhea-predominant irritable bowel syndrome

(2010) Ian M Carroll et al.   Gut Pathogens

Establishment of the gut microbiota in Western infants

(2009) I Adlerberth et al.   ACTA PAEDIATRICA

Human intestinal microbiota and healthy ageing

(2009) Kirsti Tiihonen et al.   AGEING RESEARCH REVIEWS

Probiotic and Gut Lactobacilli and Bifidobacteria: Molecular Approaches to Study Diversity and Activity

(2009) Michiel Kleerebezem et al.   Annual Review of Microbiology

Mixed-Species Genomic Microarray Analysis of Fecal Samples Reveals Differential Transcriptional Responses of Bifidobacteria in Breast- and Formula-Fed Infants

(2009) E. S. Klaassens et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial community analysis reveals high level phylogenetic alterations in the overall gastrointestinal microbiota of diarrhoea-predominant irritable bowel syndrome sufferers

(2009) Lotta Krogius-Kurikka et al.   BMC GASTROENTEROLOGY

The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age

(2009) D Mariat et al.   BMC MICROBIOLOGY

The effect of a multispecies probiotic on the composition of the faecal microbiota and bowel habits in chronic obstructive pulmonary disease patients treated with antibiotics

(2009) Catherina J. M. Koning et al.   BRITISH JOURNAL OF NUTRITION

Quantitative differences in intestinal Faecalibacterium prausnitzii in obese Indian children

(2009) Ramadass Balamurugan et al.   BRITISH JOURNAL OF NUTRITION

Altered early infant gut microbiota in children developing allergy up to 5 years of age

(2009) Y. M. Sjögren et al.   CLINICAL AND EXPERIMENTAL ALLERGY

Obesity and the human microbiome

(2009) Ruth E Ley   CURRENT OPINION IN GASTROENTEROLOGY

The importance of the development of the intestinal microbiota in infancy

(2009) Carl Vael et al.   CURRENT OPINION IN PEDIATRICS

The Role of the Gut Microbiota in Energy Metabolism and Metabolic Disease

(2009) Patrice Cani et al.   CURRENT PHARMACEUTICAL DESIGN

A Molecular Analysis of Fecal and Mucosal Bacterial Communities in Irritable Bowel Syndrome

(2009) Caroline Codling et al.   DIGESTIVE DISEASES AND SCIENCES

Towards the human intestinal microbiota phylogenetic core

(2009) Julien Tap et al.   ENVIRONMENTAL MICROBIOLOGY

Combined PCR-DGGE fingerprinting and quantitative-PCR indicates shifts in fecal population sizes and diversity of Bacteroides, bifidobacteria and Clostridium cluster IV in institutionalized elderly

(2009) Jutta Zwielehner et al.   EXPERIMENTAL GERONTOLOGY

High-Fat Diet Determines the Composition of the Murine Gut Microbiome Independently of Obesity

(2009) Marie A. Hildebrandt et al.   GASTROENTEROLOGY

Targeting the Human Microbiome With Antibiotics, Probiotics, and Prebiotics: Gastroenterology Enters the Metagenomics Era

(2009) Geoffrey A. Preidis et al.   GASTROENTEROLOGY

Low counts of Faecalibacterium prausnitzii in colitis microbiota

(2009) H. Sokol et al.   INFLAMMATORY BOWEL DISEASES

16S rRNA gene-based analysis of fecal microbiota from preterm infants with and without necrotizing enterocolitis

(2009) Yunwei Wang et al.   ISME Journal

Effect of bile salts on the DNA and membrane integrity of enteric bacteria

(2009) M. E. Merritt et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Probiotics to minimize the disruption of faecal microbiota in healthy subjects undergoing antibiotic therapy

(2009) A. Engelbrektson et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Intestinal Microbial Ecology in Premature Infants Assessed with Non–Culture-Based Techniques

(2009) Maka Mshvildadze et al.   JOURNAL OF PEDIATRICS

The inflammatory status of the elderly: The intestinal contribution

(2009) Eduardo J. Schiffrin et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Interplay Between Weight Loss and Gut Microbiota Composition in Overweight Adolescents

(2009) Arlette Santacruz et al.   Obesity

Microbiota and SCFA in Lean and Overweight Healthy Subjects

(2009) Andreas Schwiertz et al.   Obesity

Monitoring Bacterial Community of Human Gut Microbiota Reveals an Increase in Lactobacillus in Obese Patients and Methanogens in Anorexic Patients

(2009) Fabrice Armougom et al.   PLoS One

High Prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae Detected in the Human Gut Using an Improved DNA Detection Protocol

(2009) Bédis Dridi et al.   PLoS One

Human gut microbiome adopts an alternative state following small bowel transplantation

(2009) A. L. Hartman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential NF- B pathways induction by Lactobacillus plantarum in the duodenum of healthy humans correlating with immune tolerance

(2009) P. van Baarlen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein

(2009) M. Kankainen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Human gut microbiota in obesity and after gastric bypass

(2009) H. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial Community Variation in Human Body Habitats Across Space and Time

(2009) E. K. Costello et al.   SCIENCE

Diarrhoea-predominant irritable bowel syndromedistinguishable by 16S rRNA gene phylotype quantifcation

(2009) Anna Lyra et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Lower Bifidobacteria counts in both duodenal mucosa-associated and fecal microbiota in irritable bowel syndrome patients

(2009) Angèle PM Kerckhoffs et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Probiotics modulate the Bifidobacterium microbiota of elderly nursing home residents

(2008) Sampo J. Lahtinen et al.   AGE

Faecal microbiota profile of Crohn’s disease determined by terminal restriction fragment length polymorphism analysis

(2008) A. ANDOH et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Unstable Composition of the Fecal Microbiota in Ulcerative Colitis During Clinical Remission

(2008) Cristina Martinez et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Imbalances in faecal and duodenal Bifidobacterium species composition in active and non-active coeliac disease

(2008) Maria Collado et al.   BMC MICROBIOLOGY

Culture-independent analysis of the gut microbiota in colorectal cancer and polyposis

(2008) Pauline D. Scanlan et al.   ENVIRONMENTAL MICROBIOLOGY

Linking phylogenetic identities of bacteria to starch fermentation in anin vitromodel of the large intestine by RNA-based stable isotope probing

(2008) Petia Kovatcheva-Datchary et al.   ENVIRONMENTAL MICROBIOLOGY

Bifidobacteriummicrobiota and parameters of immune function in elderly subjects

(2008) Arthur C. Ouwehand et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Microbial Influences in Inflammatory Bowel Diseases

(2008) R. Balfour Sartor   GASTROENTEROLOGY

High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota

(2008) E G Zoetendal et al.   GUT

Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohnʼs disease

(2008) Ben Willing et al.   INFLAMMATORY BOWEL DISEASES

Mechanisms of action of probiotics: Recent advances

(2008) S. C. Ng et al.   INFLAMMATORY BOWEL DISEASES

Human colonic microbiota associated with diet, obesity and weight loss

(2008) S H Duncan et al.   INTERNATIONAL JOURNAL OF OBESITY

Shifts in clostridia, bacteroides and immunoglobulin-coating fecal bacteria associated with weight loss in obese adolescents

(2008) I Nadal et al.   INTERNATIONAL JOURNAL OF OBESITY

Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces

(2008) Pauline D Scanlan et al.   ISME Journal

Molecular analysis of the gut microbiota of identical twins with Crohn's disease

(2008) Johan Dicksved et al.   ISME Journal

Shotgun metaproteomics of the human distal gut microbiota

(2008) Nathan C Verberkmoes et al.   ISME Journal

BifidobacteriumandLactobacillusDNA in the human placenta

(2008) R. Satokari et al.   LETTERS IN APPLIED MICROBIOLOGY

Human metabolic phenotype diversity and its association with diet and blood pressure

(2008) Elaine Holmes et al.   NATURE

Systems biology: Metabonomics

(2008) Jeremy K. Nicholson et al.   NATURE

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

Worlds within worlds: evolution of the vertebrate gut microbiota

(2008) Ruth E. Ley et al.   NATURE REVIEWS MICROBIOLOGY

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

(2008) H. Sokol et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The inner of the two Muc2 mucin-dependent mucus layers in colon is devoid of bacteria

(2008) M. E. V. Johansson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Administration of Lactobacillus casei and Lactobacillus plantarum affects the diversity of murine intestinal lactobacilli, but not the overall bacterial community structure

(2008) Susana Fuentes et al.   RESEARCH IN MICROBIOLOGY

A putative new order of methanogenic Archaea inhabiting the human gut, as revealed by molecular analyses of the mcrA gene

(2008) Agnès Mihajlovski et al.   RESEARCH IN MICROBIOLOGY

Is meconium from healthy newborns actually sterile?

(2008) Esther Jiménez et al.   RESEARCH IN MICROBIOLOGY

Fungi and inflammatory bowel diseases: Alterations of composition and diversity

(2008) Stephan J. Ott et al.   SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY

Diversity of mucosa-associated microbiota in active and inactive ulcerative colitis

(2008) Jun Nishikawa et al.   SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY

The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing

(2008) Les Dethlefsen et al.   PLOS BIOLOGY

Imbalance in intestinal microflora constitution could be involved in the pathogenesis of inflammatory bowel disease

(2007) Hiromasa Takaishi et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Bifidobacterium pseudocatenulatum is associated with atopic eczema: A nested case-control study investigating the fecal microbiota of infants

(2007) Claudia Gore et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Reduced diversity in the early fecal microbiota of infants with atopic eczema

(2007) Mei Wang et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY