4.6 Article

The impact of antiretroviral therapy on population-level virulence evolution of HIV-1

期刊

出版社

ROYAL SOC
DOI: 10.1098/rsif.2015.0888

关键词

HIV-1; virulence evolution; antiretroviral therapy; set point viral load; between-host modelling

资金

  1. Medical Research Council
  2. Wellcome Trust [WT104748MA]
  3. Medical Research Council [1240479] Funding Source: researchfish

向作者/读者索取更多资源

In HIV-infected patients, an individual's set point viral load (SPVL) strongly predicts disease progression. Some think that SPVL is evolving, indicating that the virulence of the virus may be changing, but the data are not consistent. In addition, the widespread use of antiretroviral therapy (ART) has the potential to drive virulence evolution. We develop a simple deterministic model designed to answer the following questions: what are the expected patterns of virulence change in the initial decades of an epidemic? Could administration of ART drive changes in virulence evolution and, what is the potential size and direction of this effect? We find that even without ART we would not expect monotonic changes in average virulence. Transient decreases in virulence following the peak of an epidemic are not necessarily indicative of eventual evolution to avirulence. In the short term, we would expect widespread ART to cause limited downward pressure on virulence. In the long term, the direction of the effect is determined by a threshold condition, which we define. We conclude that, given the surpassing benefits of ART to the individual and in reducing onward transmission, virulence evolution considerations need have little bearing on how we treat.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.6
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Evolutionary Biology

A Boolean gene regulatory model of heterosis and speciation

Peter Martin Ferdinand Emmrich, Hannah Elizabeth Roberts, Vera Pancaldi

BMC EVOLUTIONARY BIOLOGY (2015)

Article Genetics & Heredity

Structured Observations Reveal Slow HIV-1 CTL Escape

Hannah E. Roberts, Jacob Hurst, Nicola Robinson, Helen Brown, Peter Flanagan, Laura Vass, Sarah Fidler, Jonathan Weber, Abdel Babiker, Rodney E. Phillips, Angela R. McLean, John Frater

PLOS GENETICS (2015)

Article Multidisciplinary Sciences

Impact of HLA-driven HIV adaptation on virulence in populations of high HIV seroprevalence

Rebecca Payne, Maximilian Muenchhoff, Jaclyn Mann, Hannah E. Roberts, Philippa Matthews, Emily Adland, Allison Hempenstall, Kuan-Hsiang Huang, Mark Brockman, Zabrina Brumme, Marc Sinclair, Toshiyuki Miura, John Frater, Myron Essex, Roger Shapiro, Bruce D. Walker, Thumbi Ndung'u, Angela R. McLean, Jonathan M. Carlson, Philip J. R. Goulder

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Sequencing of human genomes with nanopore technology

Rory Bowden, Robert W. Davies, Andreas Heger, Alistair T. Pagnamenta, Mariateresa de Cesare, Laura E. Oikkonen, Duncan Parkes, Colin Freeman, Fatima Dhalla, Smita Y. Patel, Niko Popitsch, Camilla L. C. Ip, Hannah E. Roberts, Silvia Salatino, Helen Lockstone, Gerton Lunter, Jenny C. Taylor, David Buck, Michael A. Simpson, Peter Donnelly

NATURE COMMUNICATIONS (2019)

Article Multidisciplinary Sciences

Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV)

Anna L. McNaughton, Hannah E. Roberts, David Bonsall, Mariateresa de Cesare, Jolynne Mokaya, Sheila F. Lumley, Tanya Golubchik, Paolo Piazza, Jacqueline B. Martin, Catherine de Lara, Anthony Brown, M. Azim Ansari, Rory Bowden, Eleanor Barnes, Philippa C. Matthews

SCIENTIFIC REPORTS (2019)

Article Gastroenterology & Hepatology

Effects of Primary Sclerosing Cholangitis on Risks of Cancer and Death in People With Inflammatory Bowel Disease, Based on Sex, Race, and Age

Palak J. Trivedi, Hannah Crothers, Jemma Mytton, Sofie Bosch, Tariq Iqbal, James Ferguson, Gideon M. Hirschfield

GASTROENTEROLOGY (2020)

Article Multidisciplinary Sciences

Short and long-read genome sequencing methodologies for somatic variant detection; genomic analysis of a patient with diffuse large B-cell lymphoma

Hannah E. Roberts, Maria Lopopolo, Alistair T. Pagnamenta, Eshita Sharma, Duncan Parkes, Lorne Lonie, Colin Freeman, Samantha J. L. Knight, Gerton Lunter, Helene Dreau, Helen Lockstone, Jenny C. Taylor, Anna Schuh, Rory Bowden, David Buck

Summary: Recent advances in long-read sequencing technology, such as the Oxford Nanopore Technologies PromethiON platform, have shown potential for detecting somatic variations with higher accuracy and sensitivity compared to short-read sequencing methods. However, the development of specialized algorithms is necessary to improve the specificity and precision of somatic variant calling, especially for structural variants.

SCIENTIFIC REPORTS (2021)

Article Health Care Sciences & Services

Outcomes for surgical procedures funded by the English health service but carried out in public versus independent hospitals: a database study

Hannah Crothers, Adiba Liaqat, Katharine Reeves, Samuel Watson, Suzy Gallier, Kamlesh Khunti, Paul Bird, Richard Lilford

Summary: The study found that elective surgeries conducted by Independent Sector Healthcare Providers in England are associated with shorter lengths of stay and lower readmission rates compared to treatment in NHS hospitals, across various operation types. However, there was no significant difference in mortality rates between the two types of healthcare providers.

BMJ QUALITY & SAFETY (2022)

Article Biochemical Research Methods

Using de novo assembly to identify structural variation of eight complex immune system gene regions

Jia-Yuan Zhang, Hannah Roberts, David S. C. Flores, Antony J. Cutler, Andrew C. Brown, Justin P. Whalley, Olga Mielczarek, David Buck, Helen Lockstone, Barbara Xella, Karen Oliver, Craig Corton, Emma Betteridge, Rachael Bashford-Rogers, Julian C. Knight, John A. Todd, Gavin Band

Summary: The human immune system relies on a vast array of antibodies and protein receptors to recognize pathogens, making analysis of gene families complex due to their intricate patterns of similarities and differences. By applying various sequencing methods and reconstructing immune-associated gene sequences, accurate assemblies were generated from a single individual's DNA, revealing structural differences and gene copy number variations. In-depth study of these variations may lead to a better understanding of the impact of genetic variation on human diseases.

PLOS COMPUTATIONAL BIOLOGY (2021)

Article Health Care Sciences & Services

Examining organisational responses to performance-based financial incentive systems: a case study using NHS staff influenza vaccination rates from 2012/2013 to 2019/2020

Adiba Liaqat, Suzy Gallier, Katharine Reeves, Hannah Crothers, Felicity Evison, Kelly Schmidtke, Paul Bird, Samuel Watson, Kamlesh Khunti, Richard Lilford

Summary: The study demonstrates that performance-based financial incentives lead to threshold effects, with some organizations narrowly achieving the target every year. There were no threshold effects before the introduction of the incentive or for partial payment targets. Tracking threshold effects can provide valuable information for policymakers to improve incentives and understand unintended consequences.

BMJ QUALITY & SAFETY (2022)

Article Biotechnology & Applied Microbiology

Accurate targeted long-read DNA methylation and hydroxymethylation sequencing with TAPS

Yibin Liu, Jingfei Cheng, Paulina Siejka-Zielinska, Carika Weldon, Hannah Roberts, Maria Lopopolo, Andrea Magri, Valentina D'Arienzo, James M. Harris, Jane A. McKeating, Chun-Xiao Song

GENOME BIOLOGY (2020)

Article Respiratory System

Ethnicity and risk of death in patients hospitalised for COVID-19 infection in the UK: an observational cohort study in an urban catchment area

Elizabeth Sapey, Suzy Gallier, Chris Mainey, Peter Nightingale, David McNulty, Hannah Crothers, Felicity Evison, Katharine Reeves, Domenico Pagano, Alastair K. Denniston, Krishnarajah Nirantharakumar, Peter Diggle, Simon Ball

BMJ OPEN RESPIRATORY RESEARCH (2020)

暂无数据