Modeling microbial community structure and functional diversity across time and space

Untangling Genomes from Metagenomes: Revealing an Uncultured Class of Marine Euryarchaeota

(2012) V. Iverson et al.   SCIENCE

Gut microbiota and diabetes: from pathogenesis to therapeutic perspective

(2011) Rémy Burcelin et al.   ACTA DIABETOLOGICA

The generation and maintenance of diversity in microbial communities

(2011) Noah Fierer et al.   AMERICAN JOURNAL OF BOTANY

Warming Oceans, Phytoplankton, and River Discharge: Implications for Cholera Outbreaks

(2011) Antarpreet S. Jutla et al.   AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE

Sources of Bacteria in Outdoor Air across Cities in the Midwestern United States

(2011) Robert M. Bowers et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Connecting genotype to phenotype in the era of high-throughput sequencing

(2011) Christopher S. Henry et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Human distal gut microbiome

(2011) Julian R. Marchesi   ENVIRONMENTAL MICROBIOLOGY

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

(2011) Joshua A Steele et al.   ISME Journal

Microbes in thawing permafrost: the unknown variable in the climate change equation

(2011) David E Graham et al.   ISME Journal

Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat

(2011) Zhenfeng Liu et al.   ISME Journal

Individual genome assembly from complex community short-read metagenomic datasets

(2011) Chengwei Luo et al.   ISME Journal

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Metagenomic mining for microbiologists

(2011) Tom O Delmont et al.   ISME Journal

Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw

(2011) Rachel Mackelprang et al.   NATURE

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Competitive and cooperative metabolic interactions in bacterial communities

(2011) Shiri Freilich et al.   Nature Communications

The Genomic Standards Consortium

(2011) Dawn Field et al.   PLOS BIOLOGY

Moving pictures of the human microbiome

(2011) J Gregory Caporaso et al.   GENOME BIOLOGY

Microbial Metagenomics: Beyond the Genome

(2010) Jack A. Gilbert et al.   Annual Review of Marine Science

Diversity and Genomes of Uncultured Microbial Symbionts in the Termite Gut

(2010) Yuichi HONGOH   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

A statistical explanation of MaxEnt for ecologists

(2010) Jane Elith et al.   DIVERSITY AND DISTRIBUTIONS

Dangerous shifts in ocean ecosystem function?

(2010) Ove Hoegh-Guldberg   ISME Journal

Viral and microbial community dynamics in four aquatic environments

(2010) Beltran Rodriguez-Brito et al.   ISME Journal

Experimental investigation of sulphur isotope partitioning during outgassing of hydrogen sulphide from diluted aqueous solutions and seawater

(2010) Claudia Baune et al.   ISOTOPES IN ENVIRONMENTAL AND HEALTH STUDIES

High-throughput generation, optimization and analysis of genome-scale metabolic models

(2010) Christopher S Henry et al.   NATURE BIOTECHNOLOGY

One Bacterial Cell, One Complete Genome

(2010) Tanja Woyke et al.   PLoS One

The Taxonomic and Functional Diversity of Microbes at a Temperate Coastal Site: A ‘Multi-Omic’ Study of Seasonal and Diel Temporal Variation

(2010) Jack A. Gilbert et al.   PLoS One

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Individual-Based Modeling of Carbon and Nitrogen Dynamics in Soils

(2010) Anna Gras et al.   SOIL SCIENCE

A Primer on Metagenomics

(2010) John C. Wooley et al.   PLoS Computational Biology

Characterization of Airborne Microbial Communities at a High-Elevation Site and Their Potential To Act as Atmospheric Ice Nuclei

(2009) R. M. Bowers et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A one ocean model of biodiversity

(2009) Ronald K. O’Dor et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

A trait-based approach for downscaling complexity in plankton ecosystem models

(2009) Agostino Merico et al.   ECOLOGICAL MODELLING

Comparing niche- and process-based models to reduce prediction uncertainty in species range shifts under climate change

(2009) Xavier Morin et al.   ECOLOGY

Direct Comparison between Visible Near- and Mid-Infrared Spectroscopy for Describing Diuron Sorption in Soils

(2009) Mohsen Forouzangohar et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Modeling the coupling of ocean ecology and biogeochemistry

(2009) S. Dutkiewicz et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Germ Warfare in a Microbial Mat Community: CRISPRs Provide Insights into the Co-Evolution of Host and Viral Genomes

(2009) John F. Heidelberg et al.   PLoS One

Usefulness of Bioclimatic Models for Studying Climate Change and Invasive Species

(2008) Jonathan M. Jeschke et al.   Annals of the New York Academy of Sciences

Novelty and Uniqueness Patterns of Rare Members of the Soil Biosphere

(2008) M. S. Elshahed et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Microbial contributions to climate change through carbon cycle feedbacks

(2008) Richard D Bardgett et al.   ISME Journal

Individual-based Modelling: An Essential Tool for Microbiology

(2008) Jordi Ferrer et al.   JOURNAL OF BIOLOGICAL PHYSICS

Recent developments in environmental metabolomics

(2008) Mark R. Viant   Molecular BioSystems

Physiological heterogeneity in biofilms

(2008) Philip S. Stewart et al.   NATURE REVIEWS MICROBIOLOGY

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE