Application of high-throughput sequencing to measure the performance of commonly used selective cultivation methods for the foodborne pathogen Campylobacter

Evaluation of TECRA Broth, Bolton Broth, and Direct Plating for Recovery of Campylobacter spp. from Broiler Carcass Rinsates from Commercial Processing Plants

(2016) L. J. RICHARDSON et al.   JOURNAL OF FOOD PROTECTION

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Food-borne diseases — The challenges of 20years ago still persist while new ones continue to emerge

(2010) Diane G. Newell et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Evaluation of bacterial diversity in the rumen and feces of cattle fed different levels of dried distillers grains plus solubles using bacterial tag-encoded FLX amplicon pyrosequencing1

(2010) T. R. Callaway et al.   JOURNAL OF ANIMAL SCIENCE

An evaluation of survival and detection of Campylobacter jejuni and C. coli in broiler caecal contents using culture-based methods

(2010) J.D. Rodgers et al.   JOURNAL OF APPLIED MICROBIOLOGY

A method for the growth and recovery of 17 species of Campylobacter and its subsequent application to inoculated beef

(2010) Ó.A. Lynch et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Enrichment culture for the isolation of Campylobacter spp: Effects of incubation conditions and the inclusion of blood in selective broths

(2009) Lisa K. Williams et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

(2009) Ryan T Jones et al.   ISME Journal

Eight enrichment broths for the isolation ofCampylobacter jejunifrom inoculated suspensions and ground pork

(2009) S.A. Kim et al.   LETTERS IN APPLIED MICROBIOLOGY

Evaluation of the bacterial diversity in cecal contents of laying hens fed various molting diets by using bacterial tag-encoded FLX amplicon pyrosequencing

(2009) T. R. Callaway et al.   POULTRY SCIENCE

Bacterial Community Variation in Human Body Habitats Across Space and Time

(2009) E. K. Costello et al.   SCIENCE

Bacterial Tag–Encoded FLX Amplicon Pyrosequencing (bTEFAP) for Microbiome Studies: Bacterial Diversity in the Ileum of Newly Weaned Salmonella-Infected Pigs

(2008) Scot E. Dowd et al.   Foodborne Pathogens and Disease

The development and impact of 454 sequencing

(2008) Jonathan M Rothberg et al.   NATURE BIOTECHNOLOGY

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

(2008) Micah Hamady et al.   NATURE METHODS

Worlds within worlds: evolution of the vertebrate gut microbiota

(2008) Ruth E. Ley et al.   NATURE REVIEWS MICROBIOLOGY

Comparative Metagenomics Reveals Host Specific Metavirulomes and Horizontal Gene Transfer Elements in the Chicken Cecum Microbiome

(2008) Ani Qu et al.   PLoS One

The influence of sex, handedness, and washing on the diversity of hand surface bacteria

(2008) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Performance characteristics and estimation of measurement uncertainty of three plating procedures for Campylobacter enumeration in chicken meat

(2007) I. Habib et al.   FOOD MICROBIOLOGY