标题
Current methods for global proteome identification
作者
关键词
-
出版物
Expert Review of Proteomics
Volume 9, Issue 5, Pages 519-532
出版商
Informa UK Limited
发表日期
2012-11-30
DOI
10.1586/epr.12.51
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Towards a human proteomics atlas
- (2012) Giulia Gonnelli et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- A Complex Standard for Protein Identification, Designed by Evolution
- (2012) Marc Vaudel et al. JOURNAL OF PROTEOME RESEARCH
- Semi-Automated Identification of N-Glycopeptides by Hydrophilic Interaction Chromatography, nano-Reverse-Phase LC–MS/MS, and Glycan Database Search
- (2012) Petr Pompach et al. JOURNAL OF PROTEOME RESEARCH
- TOPPAS: A Graphical Workflow Editor for the Analysis of High-Throughput Proteomics Data
- (2012) Johannes Junker et al. JOURNAL OF PROTEOME RESEARCH
- The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results
- (2012) Andrew R. Jones et al. MOLECULAR & CELLULAR PROTEOMICS
- Modification Site Localization Scoring: Strategies and Performance
- (2012) Robert J. Chalkley et al. MOLECULAR & CELLULAR PROTEOMICS
- PRIDE Inspector: a tool to visualize and validate MS proteomics data
- (2012) Rui Wang et al. NATURE BIOTECHNOLOGY
- The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome
- (2012) Young-Ki Paik et al. NATURE BIOTECHNOLOGY
- compomics-utilities: an open-source Java library for computational proteomics
- (2011) Harald Barsnes et al. BMC BIOINFORMATICS
- Probabilistic Consensus Scoring Improves Tandem Mass Spectrometry Peptide Identification
- (2011) Sven Nahnsen et al. JOURNAL OF PROTEOME RESEARCH
- Analysis of the Resolution Limitations of Peptide Identification Algorithms
- (2011) Niklaas Colaert et al. JOURNAL OF PROTEOME RESEARCH
- MassWiz: A Novel Scoring Algorithm with Target-Decoy Based Analysis Pipeline for Tandem Mass Spectrometry
- (2011) Amit Kumar Yadav et al. JOURNAL OF PROTEOME RESEARCH
- RIBAR and xRIBAR: Methods for Reproducible Relative MS/MS-based Label-Free Protein Quantification
- (2011) Niklaas Colaert et al. JOURNAL OF PROTEOME RESEARCH
- The Problem with Peptide Presumption and Low Mascot Scoring
- (2011) Bret Cooper JOURNAL OF PROTEOME RESEARCH
- On Using Samples of Known Protein Content to Assess the Statistical Calibration of Scores Assigned to Peptide-Spectrum Matches in Shotgun Proteomics
- (2011) Viktor Granholm et al. JOURNAL OF PROTEOME RESEARCH
- Universal and Confident Phosphorylation Site Localization Using phosphoRS
- (2011) Thomas Taus et al. JOURNAL OF PROTEOME RESEARCH
- Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment
- (2011) Jürgen Cox et al. JOURNAL OF PROTEOME RESEARCH
- Characterization of AMPylation on Threonine, Serine, and Tyrosine Using Mass Spectrometry
- (2011) Yan Li et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Building and Searching Tandem Mass Spectral Libraries for Peptide Identification
- (2011) Henry Lam MOLECULAR & CELLULAR PROTEOMICS
- iProphet: Multi-level Integrative Analysis of Shotgun Proteomic Data Improves Peptide and Protein Identification Rates and Error Estimates
- (2011) David Shteynberg et al. MOLECULAR & CELLULAR PROTEOMICS
- Mapping intact protein isoforms in discovery mode using top-down proteomics
- (2011) John C. Tran et al. NATURE
- Reactome pathway analysis to enrich biological discovery in proteomics data sets
- (2011) Robin Haw et al. PROTEOMICS
- Can the false-discovery rate be misleading?
- (2011) Rodrigo Barboza et al. PROTEOMICS
- A posteriori quality control for the curation and reuse of public proteomics data
- (2011) Joseph M. Foster et al. PROTEOMICS
- The good, the bad, the ugly: Validating the mass spectrometric analysis of modified peptides
- (2011) Florian Beck et al. PROTEOMICS
- Peptide identification quality control
- (2011) Marc Vaudel et al. PROTEOMICS
- SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches
- (2011) Marc Vaudel et al. PROTEOMICS
- Open MS/MS spectral library search to identify unanticipated post-translational modifications and increase spectral identification rate
- (2010) Ding Ye et al. BIOINFORMATICS
- Jmol– a paradigm shift in crystallographic visualization
- (2010) Robert M. Hanson JOURNAL OF APPLIED CRYSTALLOGRAPHY
- A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics
- (2010) Alexey I. Nesvizhskii Journal of Proteomics
- Deconvolution and Database Search of Complex Tandem Mass Spectra of Intact Proteins
- (2010) Xiaowen Liu et al. MOLECULAR & CELLULAR PROTEOMICS
- Confident Phosphorylation Site Localization Using the Mascot Delta Score
- (2010) Mikhail M. Savitski et al. MOLECULAR & CELLULAR PROTEOMICS
- mzML—a Community Standard for Mass Spectrometry Data
- (2010) Lennart Martens et al. MOLECULAR & CELLULAR PROTEOMICS
- The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
- (2010) D. Szklarczyk et al. NUCLEIC ACIDS RESEARCH
- jmzML, an open-source Java API for mzML, the PSI standard for MS data
- (2010) Richard G. Côté et al. PROTEOMICS
- XTandem Parser: An open-source library to parse and analyse X!Tandem MS/MS search results
- (2010) Thilo Muth et al. PROTEOMICS
- ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics
- (2010) Kenny Helsens et al. PROTEOMICS
- Rover: A tool to visualize and validate quantitative proteomics data from different sources
- (2010) Niklaas Colaert et al. PROTEOMICS
- Maximizing the sensitivity and reliability of peptide identification in large-scale proteomic experiments by harnessing multiple search engines
- (2010) Wen Yu et al. PROTEOMICS
- MassSieve: Panning MS/MS peptide data for proteins
- (2010) Douglas J. Slotta et al. PROTEOMICS
- Using Laboratory Information Management Systems as central part of a proteomics data workflow
- (2010) Christian Stephan et al. PROTEOMICS
- A guided tour of the Trans-Proteomic Pipeline
- (2010) Eric W. Deutsch et al. PROTEOMICS
- Deconvolution of Mixture Spectra from Ion-Trap Data-Independent-Acquisition Tandem Mass Spectrometry
- (2009) Marshall Bern et al. ANALYTICAL CHEMISTRY
- Low Cost, Scalable Proteomics Data Analysis Using Amazon’s Cloud Computing Services and Open Source Search Algorithms
- (2009) Brian D. Halligan et al. JOURNAL OF PROTEOME RESEARCH
- The Proteios Software Environment: An Extensible Multiuser Platform for Management and Analysis of Proteomics Data
- (2009) Jari Häkkinen et al. JOURNAL OF PROTEOME RESEARCH
- IDPicker 2.0: Improved Protein Assembly with High Discrimination Peptide Identification Filtering
- (2009) Ze-Qiang Ma et al. JOURNAL OF PROTEOME RESEARCH
- Unbiased Statistical Analysis for Multi-Stage Proteomic Search Strategies
- (2009) Logan J. Everett et al. JOURNAL OF PROTEOME RESEARCH
- Artificial Decoy Spectral Libraries for False Discovery Rate Estimation in Spectral Library Searching in Proteomics
- (2009) Henry Lam et al. JOURNAL OF PROTEOME RESEARCH
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- OMSSA Parser: An open-source library to parse and extract data from OMSSA MS/MS search results
- (2009) Harald Barsnes et al. PROTEOMICS
- Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines
- (2009) Andrew R. Jones et al. PROTEOMICS
- Unrestricted identification of modified proteins using MS/MS
- (2009) Erik Ahrné et al. PROTEOMICS
- De novosequencing of peptides by MS/MS
- (2009) Joerg Seidler et al. PROTEOMICS
- Peptide and protein quantification: A map of the minefield
- (2009) Marc Vaudel et al. PROTEOMICS
- An Unsupervised, Model-Free, Machine-Learning Combiner for Peptide Identifications from Tandem Mass Spectra
- (2009) Nathan Edwards et al. Clinical Proteomics
- Decoy Methods for Assessing False Positives and False Discovery Rates in Shotgun Proteomics
- (2008) Guanghui Wang et al. ANALYTICAL CHEMISTRY
- Ontologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration
- (2008) S. Bauer et al. BIOINFORMATICS
- ProteoWizard: open source software for rapid proteomics tools development
- (2008) Darren Kessner et al. BIOINFORMATICS
- N-glycan analysis by CGE-LIF: Profiling influenza A virus hemagglutininN-glycosylation during vaccine production
- (2008) Jana Schwarzer et al. ELECTROPHORESIS
- PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows
- (2008) Eric W Deutsch et al. EMBO REPORTS
- Information management for proteomics: a perspective
- (2008) Marc R Wilkins et al. Expert Review of Proteomics
- A Spectral Clustering Approach to MS/MS Identification of Post-Translational Modifications
- (2008) Jayson A. Falkner et al. JOURNAL OF PROTEOME RESEARCH
- Improving Sensitivity by Probabilistically Combining Results from Multiple MS/MS Search Methodologies
- (2008) Brian C. Searle et al. JOURNAL OF PROTEOME RESEARCH
- An Assessment of Software Solutions for the Analysis of Mass Spectrometry Based Quantitative Proteomics Data
- (2008) Lukas N. Mueller et al. JOURNAL OF PROTEOME RESEARCH
- DirecTag: Accurate Sequence Tags from Peptide MS/MS through Statistical Scoring
- (2008) David L. Tabb et al. JOURNAL OF PROTEOME RESEARCH
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
- Charting online OMICS resources: A navigational chart for clinical researchers
- (2008) Juan Antonio Vizcaíno et al. Proteomics Clinical Applications
- The Standard Protein Mix Database: A Diverse Data Set To Assist in the Production of Improved Peptide and Protein Identification Software Tools
- (2007) John Klimek et al. JOURNAL OF PROTEOME RESEARCH
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