compomics-utilities: an open-source Java library for computational proteomics

XTandem Parser: An open-source library to parse and analyse X!Tandem MS/MS search results

(2010) Thilo Muth et al.   PROTEOMICS

ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics

(2010) Kenny Helsens et al.   PROTEOMICS

Rover: A tool to visualize and validate quantitative proteomics data from different sources

(2010) Niklaas Colaert et al.   PROTEOMICS

Improved visualization of protein consensus sequences by iceLogo

(2009) Niklaas Colaert et al.   NATURE METHODS

OMSSA Parser: An open-source library to parse and extract data from OMSSA MS/MS search results

(2009) Harald Barsnes et al.   PROTEOMICS

ProteoWizard: open source software for rapid proteomics tools development

(2008) Darren Kessner et al.   BIOINFORMATICS

Peptizer, a Tool for Assessing False Positive Peptide Identifications and Manually Validating Selected Results

(2008) Kenny Helsens et al.   MOLECULAR & CELLULAR PROTEOMICS