Infectious disease, shifting climates, and opportunistic predators: cumulative factors potentially impacting wild salmon declines

The Effects of Disease-Induced Juvenile Mortality on the Transient and Asymptotic Population Dynamics of Chinook Salmon (Oncorhynchus tshawytscha)

(2014) Masami Fujiwara et al.   PLoS One

Simultaneous Quantification of Multiple Food- and Waterborne Pathogens by Use of Microfluidic Quantitative PCR

(2013) Satoshi Ishii et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cardiorespiratory performance and blood chemistry during swimming and recovery in three populations of elite swimmers: Adult sockeye salmon

(2013) Erika J. Eliason et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Universal reverse-transcriptase real-time PCR for infectious hematopoietic necrosis virus (IHNV)

(2013) MK Purcell et al.   DISEASES OF AQUATIC ORGANISMS

Transcriptomic responses to high water temperature in two species of Pacific salmon

(2013) Ken M. Jeffries et al.   Evolutionary Applications

Lack of correlation between the resistances to two rhabdovirus infections in rainbow trout

(2013) Eloi R. Verrier et al.   FISH & SHELLFISH IMMUNOLOGY

The impact of a moderate chronic temperature increase on spleen immune-relevant gene transcription depends on whether Atlantic cod (Gadus morhua) are stimulated with bacterial versus viral antigens

(2013) Tiago S. Hori et al.   GENOME

Documented and Potential Research Impacts of Subclinical Diseases in Zebrafish

(2013) M. L. Kent et al.   ILAR JOURNAL

Patterns of selection and allele diversity of class I and class II major histocompatibility loci across the species range of sockeye salmon (Oncorhynchus nerka)

(2013) Erin K. McClelland et al.   MOLECULAR ECOLOGY

Resistance to a Rhabdovirus (VHSV) in Rainbow Trout: Identification of a Major QTL Related to Innate Mechanisms

(2013) Eloi R. Verrier et al.   PLoS One

Multivariate Models of Adult Pacific Salmon Returns

(2013) Brian J. Burke et al.   PLoS One

Molecular Genetic Analysis of Stomach Contents Reveals Wild Atlantic Cod Feeding on Piscine Reovirus (PRV) Infected Atlantic Salmon Originating from a Commercial Fish Farm

(2013) Kevin Alan Glover et al.   PLoS One

Influence of multiple dam passage on survival of juvenile Chinook salmon in the Columbia River estuary and coastal ocean

(2013) E. L. Rechisky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecological Consequences of Sea-Ice Decline

(2013) E. Post et al.   SCIENCE

Climate Change and Infectious Diseases: From Evidence to a Predictive Framework

(2013) S. Altizer et al.   SCIENCE

Microsporidia: diverse, dynamic, and emergent pathogens in aquatic systems

(2013) Grant D. Stentiford et al.   TRENDS IN PARASITOLOGY

Whole-genome analysis of piscine reovirus (PRV) shows PRV represents a new genus in family Reoviridae and its genome segment S1 sequences group it into two separate sub-genotypes

(2013) Molly JT Kibenge et al.   Virology Journal

Chronic Bee Paralysis Virus and Nosema ceranae Experimental Co-Infection of Winter Honey Bee Workers (Apis mellifera L.)

(2013) Ivan Toplak et al.   Viruses-Basel

Cardiorespiratory collapse at high temperature in swimming adult sockeye salmon

(2013) E. J. Eliason et al.   Conservation Physiology

Density of the Waterborne Parasite Ceratomyxa shasta and Its Biological Effects on Salmon

(2012) Sascha L. Hallett et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evolution of infectious salmon anaemia virus (ISA virus)

(2012) Heidrun Plarre et al.   ARCHIVES OF VIROLOGY

A Circulation Model for the Discovery Islands, British Columbia

(2012) M. G.G. Foreman et al.   ATMOSPHERE-OCEAN

High river temperature reduces survival of sockeye salmon (Oncorhynchus nerka) approaching spawning grounds and exacerbates female mortality

(2012) Eduardo G. Martins et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

A widespread decrease in productivity of sockeye salmon (Oncorhynchus nerka) populations in western North America

(2012) Randall M. Peterman et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Quantification of piscine reovirus (PRV) at different stages of Atlantic salmon Salmo salar production

(2012) M Løvoll et al.   DISEASES OF AQUATIC ORGANISMS

Relating spatial and temporal scales of climate and ocean variability to survival of Pacific Northwest Chinook salmon (Oncorhynchus tshawytscha)

(2012) RISHI SHARMA et al.   FISHERIES OCEANOGRAPHY

The Diversity of Microsporidia in Parasitic Copepods (Caligidae: Siphonostomatoida) in the Northeast Pacific Ocean with Description of Facilispora margolisi n. g., n. sp. and a new Family Facilisporidae n. fam.

(2012) Simon R. M. Jones et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Quantitative methods for analysing cumulative effects on fish migration success: a review

(2012) J. E. Johnson et al.   JOURNAL OF FISH BIOLOGY

Dead fish swimming: a review of research on the early migration and high premature mortality in adult Fraser River sockeye salmon Oncorhynchus nerka

(2012) S. G. Hinch et al.   JOURNAL OF FISH BIOLOGY

Parasites and hepatic lesions among pink salmon, Oncorhynchus gorbuscha (Walbaum), during early seawater residence

(2012) S M Saksida et al.   JOURNAL OF FISH DISEASES

Relationship Between Temperature and Ceratomyxa shasta–Induced Mortality In Klamath River Salmonids

(2012) R. Adam Ray et al.   JOURNAL OF PARASITOLOGY

When is bigger better? Early marine residence of middle and upper Columbia River spring Chinook salmon

(2012) LM Tomaro et al.   MARINE ECOLOGY PROGRESS SERIES

RNA-Seq Identifies SNP Markers for Growth Traits in Rainbow Trout

(2012) Mohamed Salem et al.   PLoS One

Physiological Benefits of Being Small in a Changing World: Responses of Coho Salmon (Oncorhynchus kisutch) to an Acute Thermal Challenge and a Simulated Capture Event

(2012) Timothy D. Clark et al.   PLoS One

Transcriptional Responses of Resistant and Susceptible Fish Clones to the Bacterial Pathogen Flavobacterium psychrophilum

(2012) Christelle Langevin et al.   PLoS One

Functional Feeds Reduce Heart Inflammation and Pathology in Atlantic Salmon (Salmo salar L.) following Experimental Challenge with Atlantic Salmon Reovirus (ASRV)

(2012) Laura Martinez-Rubio et al.   PLoS One

Climate effects on growth, phenology, and survival of sockeye salmon (Oncorhynchus nerka): a synthesis of the current state of knowledge and future research directions

(2012) Eduardo G. Martins et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Migration links ocean-scale competition and local ocean conditions with exposure to farmed salmon to shape wild salmon dynamics

(2012) B. M. Connors et al.   Conservation Letters

The Synchronous Failure of Juvenile Pacific Salmon and Herring Production in the Strait of Georgia in 2007 and the Poor Return of Sockeye Salmon to the Fraser River in 2009

(2012) R. J. Beamish et al.   Marine and Coastal Fisheries

Proteome ofAedes aegyptiin response to infection and coinfection with microsporidian parasites

(2012) Alison B. Duncan et al.   Ecology and Evolution

Consequences of high temperatures and premature mortality on the transcriptome and blood physiology of wild adult sockeye salmon (Oncorhynchus nerka)

(2012) Ken M. Jeffries et al.   Ecology and Evolution

Naïve Atlantic salmon (Salmo Salar L.) surviving a lethal challenge with infectious pancreatic necrosis virus (IPNV) shows upregulation of antiviral genes in head-kidney, including Vig-2

(2011) Inderjit Singh Marjara et al.   AQUACULTURE

MHC mediated resistance to Piscirickettsia salmonis in salmonids farmed in Chile

(2011) Daniela Gómez et al.   AQUACULTURE

Impacts of multispecies parasitism on juvenile coho salmon (Oncorhynchus kisutch) in Oregon

(2011) Jayde A. Ferguson et al.   AQUACULTURE

Methodology for genetic evaluation of disease resistance in aquaculture species: challenges and future prospects

(2011) Jørgen Ødegård et al.   AQUACULTURE RESEARCH

Rapid growth in the early marine period improves the marine survival of Chinook salmon (Oncorhynchus tshawytscha) in Puget Sound, Washington

(2011) Elisabeth J Duffy et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Aerobic training stimulates growth and promotes disease resistance in Atlantic salmon (Salmo salar)

(2011) Vicente Castro et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY A-MOLECULAR & INTEGRATIVE PHYSIOLOGY

Vector potential of the salmon louse Lepeophtheirus salmonis in the transmission of infectious haematopoietic necrosis virus (IHNV)

(2011) E Jakob et al.   DISEASES OF AQUATIC ORGANISMS

Varying disease-mediated selection at different life-history stages of Atlantic salmon in fresh water

(2011) Elvira de Eyto et al.   Evolutionary Applications

The role of temperature in the capture and release of fish

(2011) Marika Kirstin Gale et al.   FISH AND FISHERIES

Scale and the detection of climatic influences on the productivity of salmon populations

(2011) LAUREN A. ROGERS et al.   GLOBAL CHANGE BIOLOGY

Contrasting responses to selection in class I and class IIα major histocompatibility-linked markers in salmon

(2011) S Consuegra et al.   HEREDITY

Pacific salmon abundance trends and climate change

(2011) J. R. Irvine et al.   ICES JOURNAL OF MARINE SCIENCE

Mortality of coho salmon (Oncorhynchus kisutch) associated with burdens of multiple parasite species

(2011) Jayde A. Ferguson et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Quantitative Polymerase Chain Reaction (PCR) for Detection of Aquatic Animal Pathogens in a Diagnostic Laboratory Setting

(2011) Maureen K. Purcell et al.   JOURNAL OF AQUATIC ANIMAL HEALTH

Exceptional aerobic scope and cardiovascular performance of pink salmon (Oncorhynchus gorbuscha) may underlie resilience in a warming climate

(2011) T. D. Clark et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Prevalence of viral RNA from piscine reovirus and piscine myocarditis virus in Atlantic salmon, Salmo salar L., broodfish and progeny

(2011) C R Wiik-Nielsen et al.   JOURNAL OF FISH DISEASES

Cardiomyopathy Syndrome of Atlantic Salmon (Salmo salar L.) Is Caused by a Double-Stranded RNA Virus of the Totiviridae Family

(2011) O. Haugland et al.   JOURNAL OF VIROLOGY

Nearshore ecosystem predictors of a bacterial infection in juvenile Chinook salmon

(2011) LD Rhodes et al.   MARINE ECOLOGY PROGRESS SERIES

Annual coastal migration of juvenile Chinook salmon: static stock-specific patterns in a highly dynamic ocean

(2011) S Tucker et al.   MARINE ECOLOGY PROGRESS SERIES

A conserved haplotype controls parallel adaptation in geographically distant salmonid populations

(2011) MICHAEL R. MILLER et al.   MOLECULAR ECOLOGY

Multiple tissue transcriptomic responses to Piscirickettsia salmonis in Atlantic salmon (Salmo salar)

(2011) Luca Tacchi et al.   PHYSIOLOGICAL GENOMICS

In situ measurement of coastal ocean movements and survival of juvenile Pacific salmon

(2011) D. W. Welch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differences in Thermal Tolerance Among Sockeye Salmon Populations

(2011) E. J. Eliason et al.   SCIENCE

Genomic Signatures Predict Migration and Spawning Failure in Wild Canadian Salmon

(2011) K. M. Miller et al.   SCIENCE

Effects of Ceratomyxosis on Population Dynamics of Klamath Fall-Run Chinook Salmon

(2011) Masami Fujiwara et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Complex dynamics at the interface between wild and domestic viruses of finfish

(2011) Gael Kurath et al.   Current Opinion in Virology

Fatty acid requirements in ontogeny of marine and freshwater fish

(2010) Douglas R. Tocher   AQUACULTURE RESEARCH

Parvicapsula minibicornis infections in gill and kidney and the premature mortality of adult sockeye salmon (Oncorhynchus nerka) from Cultus Lake, British Columbia

(2010) Michael J. Bradford et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Comparison and evaluation of Renibacterium salmoninarum quantitative PCR diagnostic assays using field samples of Chinook and coho salmon

(2010) TA Sandell et al.   DISEASES OF AQUATIC ORGANISMS

Intensive Farming: Evolutionary Implications for Parasites and Pathogens

(2010) Adèle Mennerat et al.   Evolutionary Biology

Developing a Mechanistic Understanding of Fish Migrations by Linking Telemetry with Physiology, Behavior, Genomics and Experimental Biology: An Interdisciplinary Case Study on Adult Fraser River Sockeye Salmon

(2010) Steven J. Cooke et al.   FISHERIES

The consequences of angling, beach seining, and confinement on the physiology, post-release behaviour and survival of adult sockeye salmon during upriver migration

(2010) Michael R. Donaldson et al.   FISHERIES RESEARCH

Effects of river temperature and climate warming on stock-specific survival of adult migrating Fraser River sockeye salmon (Oncorhynchus nerka)

(2010) EDUARDO G. MARTINS et al.   GLOBAL CHANGE BIOLOGY

Major histocompatibility complex polymorphism: dynamics and consequences of parasite-mediated local adaptation in fishes

(2010) C. Eizaguirre et al.   JOURNAL OF FISH BIOLOGY

Association of red-mark syndrome with a Rickettsia-like organism and its connection with strawberry disease in the USA

(2010) M Metselaar et al.   JOURNAL OF FISH DISEASES

Comparative Genomics Identifies Candidate Genes for Infectious Salmon Anemia (ISA) Resistance in Atlantic Salmon (Salmo salar)

(2010) Jieying Li et al.   MARINE BIOTECHNOLOGY

Physiological Condition Differentially Affects the Behavior and Survival of Two Populations of Sockeye Salmon during Their Freshwater Spawning Migration

(2010) M. R. Donaldson et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY

Heart and Skeletal Muscle Inflammation of Farmed Salmon Is Associated with Infection with a Novel Reovirus

(2010) Gustavo Palacios et al.   PLoS One

Advancing the Science and Practice of Fish Kill Investigations

(2010) Van T. La et al.   REVIEWS IN FISHERIES SCIENCE

Emerging viral diseases of fish and shrimp

(2010) Peter J. Walker et al.   VETERINARY RESEARCH

Early Marine Survival of Coho Salmon in the Strait of Georgia Declines to Very Low Levels

(2010) R. J. Beamish et al.   Marine and Coastal Fisheries

Bacterial coldwater disease of fishes caused by Flavobacterium psychrophilum

(2010) Clifford E. Starliper   Journal of Advanced Research

Does reduced MHC diversity decrease viability of vertebrate populations?

(2009) Jacek Radwan et al.   BIOLOGICAL CONSERVATION

Hepatic gene expression profiling reveals protective responses in Atlantic salmon vaccinated against furunculosis

(2009) Stanko Škugor et al.   BMC GENOMICS

Freshwater and marine migration and survival of endangered Cultus Lake sockeye salmon (Oncorhynchus nerka) smolts using POST, a large-scale acoustic telemetry array

(2009) David W. Welch et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Fish cardiorespiratory physiology in an era of climate changeThe present review is one of a series of occasional review articles that have been invited by the Editors and will feature the broad range of disciplines and expertise represented in our Editorial Advisory Board.

(2009) A. P. Farrell et al.   CANADIAN JOURNAL OF ZOOLOGY

Unique physiology of host-parasite interactions in microsporidia infections

(2009) Bryony A. P. Williams   CELLULAR MICROBIOLOGY

A top-down survival mechanism during early marine residency explains coho salmon year-class strength in southeast Alaska

(2009) Jacob J. LaCroix et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

The susceptibility of Atlantic salmon fry to freshwater infectious pancreatic necrosis is largely explained by a major QTL

(2009) R D Houston et al.   HEREDITY

A critical review of Pacific salmon marine research relating to climate

(2009) C. M. Chittenden et al.   ICES JOURNAL OF MARINE SCIENCE

Effects of temperature on disease progression and swimming stamina inIchthyophonus-infected rainbow trout,Oncorhynchus mykiss(Walbaum)

(2009) R Kocan et al.   JOURNAL OF FISH DISEASES

Infectious haematopoietic necrosis virus genogroup-specific virulence mechanisms in sockeye salmon,Oncorhynchus nerka(Walbaum), from Redfish Lake, Idaho

(2009) M K Purcell et al.   JOURNAL OF FISH DISEASES

Infectious salmon anaemia virus (ISAV) isolates induce distinct gene expression responses in the Atlantic salmon (Salmo salar) macrophage/dendritic-like cell line TO, assessed using genomic techniques

(2009) Samuel T. Workenhe et al.   MOLECULAR IMMUNOLOGY

Desmozoon lepeophtherii n. gen., n. sp., (Microsporidia: Enterocytozoonidae) infecting the salmon louse Lepeophtheirus salmonis (Copepoda: Caligidae)

(2009) Mark A Freeman et al.   Parasites & Vectors

MHC standing genetic variation and pathogen resistance in wild Atlantic salmon

(2009) M. Dionne et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Mechanisms Influencing the Timing and Success of Reproductive Migration in a Capital Breeding Semelparous Fish Species, the Sockeye Salmon

(2009) Glenn T. Crossin et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY

Intensive fish farming and the evolution of pathogen virulence: the case of columnaris disease in Finland

(2009) K. Pulkkinen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Seasonal Stock-Specific Migrations of Juvenile Sockeye Salmon along the West Coast of North America: Implications for Growth

(2009) S. Tucker et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Selective breeding can increase resistance of Atlantic salmon to furunculosis, infectious salmon anaemia and infectious pancreatic necrosis

(2008) Sissel Kjøglum et al.   AQUACULTURE RESEARCH

Discovery of genes implicated in whirling disease infection and resistance in rainbow trout using genome-wide expression profiling

(2008) Melinda R Baerwald et al.   BMC GENOMICS

Forage fish of the Pacific Rim as revealed by diet of a piscivorous seabird: synchrony and relationships with sea surface temperature

(2008) Julie A. Thayer et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Exposure to high temperature influences the behaviour, physiology, and survival of sockeye salmon during spawning migration

(2008) G. T. Crossin et al.   CANADIAN JOURNAL OF ZOOLOGY

Resistance to amoebic gill disease (AGD) is characterised by the transcriptional dysregulation of immune and cell cycle pathways

(2008) James W. Wynne et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY

How natural infection by Nosema ceranae causes honeybee colony collapse

(2008) Mariano Higes et al.   ENVIRONMENTAL MICROBIOLOGY

ORIGINAL ARTICLE: Rapid natural selection for resistance to an introduced parasite of rainbow trout

(2008) Mark P. Miller et al.   Evolutionary Applications

PERSPECTIVE: Potential responses to climate change in organisms with complex life histories: evolution and plasticity in Pacific salmon

(2008) L. G. Crozier et al.   Evolutionary Applications

Major Quantitative Trait Loci Affect Resistance to Infectious Pancreatic Necrosis in Atlantic Salmon (Salmo salar)

(2008) R. D. Houston et al.   GENETICS

Accelerated decline in the Arctic sea ice cover

(2008) Josefino C. Comiso et al.   GEOPHYSICAL RESEARCH LETTERS

A description of the origins, design and performance of the TRAITS–SGP Atlantic salmon Salmo salar L. cDNA microarray

(2008) J. B. Taggart et al.   JOURNAL OF FISH BIOLOGY

Parasite-associated mortality of juvenile Pacific salmon caused by the trematode Nanophyetus salmincola during early marine residence

(2008) KC Jacobson et al.   MARINE ECOLOGY PROGRESS SERIES

Cross-Species Virus Transmission and the Emergence of New Epidemic Diseases

(2008) C. R. Parrish et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The Application of Rapid Microsatellite-Based Stock Identification to Management of a Chinook Salmon Troll Fishery off the Queen Charlotte Islands, British Columbia

(2008) Terry D. Beacham et al.   NORTH AMERICAN JOURNAL OF FISHERIES MANAGEMENT

Retrospective Evaluation of Preseason Forecasting Models for Sockeye and Chum Salmon

(2008) Steven L. Haeseker et al.   NORTH AMERICAN JOURNAL OF FISHERIES MANAGEMENT

Pacific Salmon in Hot Water: Applying Aerobic Scope Models and Biotelemetry to Predict the Success of Spawning Migrations

(2008) A. P. Farrell et al.   PHYSIOLOGICAL AND BIOCHEMICAL ZOOLOGY

A Global Assessment of Salmon Aquaculture Impacts on Wild Salmonids

(2008) Jennifer S Ford et al.   PLOS BIOLOGY

Temperature-mediated en route migration mortality and travel rates of endangered Snake River sockeye salmon

(2007) M. L. Keefer et al.   ECOLOGY OF FRESHWATER FISH

Adaptation from standing genetic variation

(2007) R BARRETT et al.   TRENDS IN ECOLOGY & EVOLUTION