4.5 Article

Identification and mapping of quantitative resistance to late blight (Phytophthora infestans) in Solanum habrochaites LA1777

期刊

EUPHYTICA
卷 179, 期 3, 页码 427-438

出版社

SPRINGER
DOI: 10.1007/s10681-010-0340-7

关键词

Tomato; Late blight; Phytophthora infestans; Quantitative resistance; Solanum habrochaites; Introgression lines

资金

  1. National Basic Research and Development Program [2009CB119000]
  2. Hi-Tech Research and Development Program [2006AA10 Z1A6]
  3. Key Laboratory of Horticultural Crops Genetic Improvement (Ministry of Agriculture of the People's Republic of China)
  4. Royal Dutch Academy of Sciences (KNAW)
  5. Asian Facility [AF01/CH/8]

向作者/读者索取更多资源

Late blight (Phytophthora infestans) can have devastating effects on tomato production over the whole world. Most of the commercial cultivars of tomato, Solanum lycopersicum, are susceptible. Qualitative and quantitative resistance has been described in wild relatives of tomato. In general qualitative resistance can more easily be overcome by newly evolved isolates. Screening of three S. habrochaites accessions (LA1033, LA2099 and LA1777) through a whole plant assay showed that accession LA1777 had a good level of resistance to several isolates of P. infestans. To explore the potential in this wild species, an introgression line (IL) population of S. habrochaites LA1777 was used to screen individual chromosome regions of the wild species by a detached leaf assay. Two major isolates (T(1,2) and T(1,2,4)) were used and two parameters were measured: lesion size (LS), and disease incidence (DI). Substantial variation was observed between the individual lines. QTLs were identified for LS but not for DI. The presence of five QTLs derived from LA1777 (Rlbq4a, Rlbq4b, Rlbq7, Rlbq8 and Rlbq12) results in unambiguous higher levels of resistance. All QTLs co-localized with previously described QTLs from S. habrochaites LA2099 except QTL Rlbq4b, which is therefore a novel QTL.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.5
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Plant Sciences

European traditional tomatoes galore: a result of farmers' selection of a few diversity-rich loci

Jose Blanca, Clara Pons, Javier Montero-Pau, David Sanchez-Matarredona, Peio Ziarsolo, Lilian Fontanet, Josef Fisher, Mariola Plazas, Joan Casals, Jose Luis Rambla, Alessandro Riccini, Samuela Pombarella, Alessandra Ruggiero, Maria Sulli, Stephania Grillo, Angelos Kanellis, Giovanni Giuliano, Richard Finkers, Maria Cammareri, Silvana Grandillo, Andrea Mazzucato, Mathilde Causse, Maria Jose Diez, Jaime Prohens, Dani Zamir, Joaquin Canizares, Antonio Jose Monforte, Antonio Granell

Summary: A study on European traditional tomato varieties found that high phenotypic diversity was created by traditional farmer-driven selection, inadvertently combining a few polymorphic loci. Analysis of 1254 tomato accessions revealed a continuous genetic gradient between traditional and modern varieties, with low genetic diversity and distinct genetic groups among traditional European tomatoes. Spanish and Italian varieties showed higher genetic diversity, possibly indicating independent secondary centers of diversity, while other varieties may be the result of recent migrations and hybridizations among European regions. A few highly polymorphic loci were associated with fruit morphological traits in the European traditional collection, suggesting a history of balancing selection by tomato farmers to maintain morphological variation.

JOURNAL OF EXPERIMENTAL BOTANY (2022)

Article Plant Sciences

Atlas of phenotypic, genotypic and geographical diversity present in the European traditional tomato

Clara Pons, Joan Casals, Samuela Palombieri, Lilian Fontanet, Alessandro Riccini, Jose Luis Rambla, Alessandra Ruggiero, Maria del Rosario Figas, Mariola Plazas, Athanasios Koukounaras, Maurizio E. Picarella, Maria Sulli, Josef Fisher, Peio Ziarsolo, Jose Blanca, Joaquin Canizares, Maria Cammareri, Antonella Vitiello, Giorgia Batelli, Angelos Kanellis, Matthijs Brouwer, Richard Finkers, Konstantinos Nikoloudis, Salvador Soler, Giovanni Giuliano, Stephania Grillo, Silvana Grandillo, Dani Zamir, Andrea Mazzucato, Mathilde Causse, Maria Jose Diez, Jaime Prohens, Antonio Jose Monforte, Antonio Granell

Summary: This study evaluated a large traditional tomato collection from Southern Europe, revealing a wide range of phenotypic variability and differences among countries. By integrating phenotypic data and origin information, eight main tomato types were defined and 159 novel loci associations were identified.

HORTICULTURE RESEARCH (2022)

Article Multidisciplinary Sciences

Genetic polyploid phasing from low-depth progeny samples

Sven Schrinner, Rebecca Serra Mari, Richard Finkers, Paul Arens, Bjoern Usadel, Tobias Marschall, Gunnar W. Klau

Summary: This article presents a genetic phasing method for plant breeding that can phase the haplotype sequences of parental samples using a large number of low-depth progeny samples. By integrating weak Mendelian progeny signals with a Bayesian log-likelihood model and utilizing an interval scheduling approach, the method can compute high-quality sparse phasings.

ISCIENCE (2022)

Article Agronomy

Over-expression of a YUCCA-Like Gene Results in Altered Shoot and Stolon Branching and Reduced Potato Tuber Size

Efstathios Roumeliotis, Bjorn Kloosterman, Marian Oortwijn, Wouter Kohlen, Harro J. Bouwmeester, Christian W. B. Bachem, Richard G. F. Visser

Summary: This study investigates the effects of altered auxin content on potato development by cloning and overexpressing the StYUCCA8 gene. The transgenic plants exhibited increased shoot and stolon branching, reduced leaf size, lower average tuber fresh weight, and enhanced adventitious and lateral root formation. Despite the high expression of the StYUCCA8 gene, the concentration of auxin was not altered in the shoot apex but significantly lower in the basal part of the stem.

POTATO RESEARCH (2023)

Review Genetics & Heredity

Developing future heat-resilient vegetable crops

Faisal Saeed, Usman Khalid Chaudhry, Ali Raza, Sidra Charagh, Allah Bakhsh, Abhishek Bohra, Sumbul Ali, Annapurna Chitikineni, Yasir Saeed, Richard G. F. Visser, Kadambot H. M. Siddique, Rajeev K. Varshney

Summary: Climate change directly impacts the yield of vegetables through rising temperatures. Breeding for climate-resilient crops requires significant time and effort, but advancements in omics technologies have improved the efficiency of identifying pathways for high-temperature stress resilience in vegetable crops. Genomics-assisted breeding, gene editing, and speed breeding offer new approaches to develop temperature-resilient vegetables more efficiently. This review discusses the effects of heat stress on vegetables and highlights the use of omics and genome editing in producing temperature-resilient vegetables.

FUNCTIONAL & INTEGRATIVE GENOMICS (2023)

Article Plant Sciences

Fine mapping of meiotic crossovers in Brassica oleracea reveals patterns and variations depending on direction and combination of crosses

Chengcheng Cai, Alexandre Pele, Johan Bucher, Richard Finkers, Guusje Bonnema

Summary: Meiotic recombination is crucial for proper chromosome segregation and allelic combination generation. In this study, we analyzed 20 crosses of Brassica oleracea and produced high-resolution recombination maps. The results revealed similar recombination landscapes among different cross combinations and between sexes. We also found that gene density and large structural variations strongly influenced recombination formation in B. oleracea, and there were extensive variations in recombination number depending on the initial parents crossed with.

PLANT JOURNAL (2023)

Article Agronomy

High-Density Linkage Map Constructed from a Skim Sequenced Diploid Potato Population Reveals Transmission Distortion and QTLs for Tuber Yield and Pollen Shed

Corentin R. Clot, Xulan Wang, Joey Koopman, Alejandro Therese Navarro, Johan Bucher, Richard G. F. Visser, Richard Finkers, Herman J. van Eck

Summary: The reinvention of potato as a diploid hybrid crop requires understanding of mutational load, recombination landscape, and genetic basis of fertility. In this study, the OutcrossSeq pipeline was implemented in R for analyzing a large diploid potato population. This pipeline allowed for marker inference, linkage map construction, and QTL mapping, leading to new insights for diploid potato breeding.

POTATO RESEARCH (2023)

Article Genetics & Heredity

Smooth Descent: A ploidy-aware algorithm to improve linkage mapping in the presence of genotyping errors

Alejandro Therese Navarro, Peter M. Bourke, Eric van de Weg, Corentin R. Clot, Paul Arens, Richard Finkers, Chris Maliepaard

Summary: Linkage mapping is a method for ordering markers based on recombination events, but genotyping errors are common in high-throughput genotyping data. In this study, an algorithm called Smooth Descent (SD) was developed to improve the accuracy of genetic mapping and correct genotyping errors. SD is able to handle any marker type and autopolyploids, and it performs well in the presence of genotyping errors with error rates between 5% and 20% and non-homogeneous error rates among markers or individuals.

FRONTIERS IN GENETICS (2023)

Article Agronomy

Identification of Two Novel Loci Underlying Tolerance to Clavibacter michiganensis Originating from Solanum arcanum LA2157

Eleni Koseoglou, Matthijs Brouwer, Derek Mudadirwa, Jan M. van der Wolf, Richard G. F. Visser, Yuling Bai

Summary: Research indicates that tolerance to Clavibacter michiganensis (Cm) in tomatoes is controlled by multiple loci, with a major locus located on chromosome 7. However, further investigation reveals that in addition to chromosome 7, there are also other loci on chromosomes 2 and 4 associated with tolerance to Cm.

AGRONOMY-BASEL (2023)

Article Plant Sciences

Diversity and genetic architecture of agro-morphological traits in a core collection of European traditional tomato

Clara Pons, Joan Casals, Matthijs Brower, Adriana Sacco, Alessandro Riccini, Patrick Hendrickx, Maria del Rosario Figas, Josef Fisher, Silvana Grandillo, Andrea Mazzucato, Salvador Soler, Dani Zamir, Mathilde Causse, Maria Jose Diez, Richard Finkers, Jaime Prohens, Antonio Jose Monforte, Antonio Granell

Summary: European traditional tomato varieties have shown excellent agronomic performance and stability, even outperforming modern varieties. Genome-wide association studies have identified 141 QTLs associated with agro-morphological traits and revealed the genetic basis of stability. This study enhances our understanding of the genetic diversity available in European traditional tomato germplasm.

JOURNAL OF EXPERIMENTAL BOTANY (2023)

Article Multidisciplinary Sciences

The benefits and struggles of FAIR data: the case of reusing plant phenotyping data

Evangelia A. Papoutsoglou, Ioannis N. Athanasiadis, Richard G. F. Visser, Richard Finkers

Summary: Plant phenotyping experiments produce heterogeneous and poorly documented data, making it difficult to reuse. This study explores the challenges and benefits of making data FAIR, using potato developmental traits as a case study. By integrating and verifying datasets with environmental data, we discuss the potential for reproducibility and reusability of FAIR data, along with the challenges encountered in this process.

SCIENTIFIC DATA (2023)

Article Genetics & Heredity

Crossover shortage in potato is caused by StMSH4 mutant alleles and leads to either highly uniform unreduced pollen or sterility

Corentin R. Clot, Dennis Klein, Joey Koopman, Cees Schuit, Christel J. M. Engelen, Ronald C. B. Hutten, Matthijs Brouwer, Richard G. F. Visser, Martina Juranic, Herman J. van Eck

Summary: The balanced segregation of homologous chromosomes is crucial for fertility during meiosis. A reduction in crossover (CO) number can lead to unpaired chromosomes and the production of unbalanced, sterile gametes. However, if combined with another meiotic alteration, it can result in uniform, non-recombinant gametes. In potato, a recessive trait known as CO shortage has been mapped to chromosome 8. This study has identified StMSH4 as a candidate gene for CO shortage and discovered nonfunctional alleles in potato cultivars, providing breeders with options for improving fertility or producing uniform gametes.

GENETICS (2023)

Article Plant Sciences

Crucial factors for the feasibility of commercial hybrid breeding in food crops

Emily M. S. Ter Steeg, Paul C. Struik, Richard G. F. Visser, Pim Lindhout

Summary: This article analyzes how biological and economic factors determine whether a commercial plant breeder will choose a hybrid breeding system, highlighting the cost of seed production as a key factor. It emphasizes the effectiveness of hybrid breeding in crop genetic improvement, but also points out that high seed production costs are the main hindrance to its commercial application.

NATURE PLANTS (2022)

Article Horticulture

Low CO2 Levels Are Detrimental for In Vitro Plantlets through Disturbance of Photosynthetic Functionality and Accumulation of Reactive Oxygen Species

Naser Askari, Sasan Aliniaeifard, Richard G. F. Visser

Summary: CO2 starvation in tissue culture has a negative impact on the growth of regenerated plantlets, with or without sucrose in the medium, indicating that reduced CO2 concentrations in vitro result in disrupted photosynthesis functionality and the generation of reactive oxygen species.

HORTICULTURAE (2022)

暂无数据