15N- and2H proteomic stable isotope probing links nitrogen flow to archaeal heterotrophic activity

Limitations in detection of 15N incorporation by mass spectrometry in protein-based stable isotope probing (protein-SIP)

(2013) Martin Taubert et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

New Group in the Leptospirillum Clade: Cultivation-Independent Community Genomics, Proteomics, and Transcriptomics of the New Species “Leptospirillum Group IV UBA BS”

(2013) Daniela S. Aliaga Goltsman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sipros/ProRata: a versatile informatics system for quantitative community proteomics

(2013) Yingfeng Wang et al.   BIOINFORMATICS

Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea

(2013) Alexis P Yelton et al.   BMC GENOMICS

Oxygen-dependent niche formation of a pyrite-dependent acidophilic consortium built by archaea and bacteria

(2013) Sibylle Ziegler et al.   ISME Journal

Heterotrophic Archaea Contribute to Carbon Cycling in Low-pH, Suboxic Biofilm Communities

(2012) Nicholas B. Justice et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Protein-SIP enables time-resolved analysis of the carbon flux in a sulfate-reducing, benzene-degrading microbial consortium

(2012) Martin Taubert et al.   ISME Journal

In Situ Evolutionary Rate Measurements Show Ecological Success of Recently Emerged Bacterial Hybrids

(2012) V. J. Denef et al.   SCIENCE

Exploring the limits of robust detection of incorporation of 13C by mass spectrometry in protein-based stable isotope probing (protein-SIP)

(2011) Martin Taubert et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Quantitative proteomic analyses of the response of acidophilic microbial communities to different pH conditions

(2011) Christopher P Belnap et al.   ISME Journal

Quantitative Tracking of Isotope Flows in Proteomes of Microbial Communities

(2011) Chongle Pan et al.   MOLECULAR & CELLULAR PROTEOMICS

Posttranslational modification and sequence variation of redox-active proteins correlate with biofilm life cycle in natural microbial communities

(2010) Steven W Singer et al.   ISME Journal

AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature

(2010) Vincent J Denef et al.   ISME Journal

Direct Cellular Lysis/Protein Extraction Protocol for Soil Metaproteomics

(2010) Karuna Chourey et al.   JOURNAL OF PROTEOME RESEARCH

Response to oxygen limitation in bacteria of the genus sulfobacillus

(2010) I.A. Tsaplina et al.   MICROBIOLOGY

Decimal Place Slope, A Fast and Precise Method for Quantifying13C Incorporation Levels for Detecting the Metabolic Activity of Microbial Species

(2010) Nico Jehmlich et al.   MOLECULAR & CELLULAR PROTEOMICS

Protein-based stable isotope probing

(2010) Nico Jehmlich et al.   Nature Protocols

An appraisal of methods for linking environmental processes to specific microbial taxa

(2010) Maria-Luisa Gutierrez-Zamora et al.   REVIEWS IN ENVIRONMENTAL SCIENCE AND BIO-TECHNOLOGY

Community Genomic and Proteomic Analyses of Chemoautotrophic Iron-Oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) Bacteria in Acid Mine Drainage Biofilms

(2009) D. S. A. Goltsman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Insights into the Diversity of Eukaryotes in Acid Mine Drainage Biofilm Communities

(2009) B. J. Baker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Cultivation and quantitative proteomic analyses of acidophilic microbial communities

(2009) Christopher P Belnap et al.   ISME Journal

eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations

(2009) J. Muller et al.   NUCLEIC ACIDS RESEARCH

Community-wide analysis of microbial genome sequence signatures

(2009) Gregory J Dick et al.   GENOME BIOLOGY

Characterization of Cytochrome 579, an Unusual Cytochrome Isolated from an Iron-Oxidizing Microbial Community

(2008) S. W. Singer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sulfobacillus benefaciens sp. nov., an acidophilic facultative anaerobic Firmicute isolated from mineral bioleaching operations

(2008) D. Barrie Johnson et al.   EXTREMOPHILES

Protein-based stable isotope probing (Protein-SIP) reveals active species within anoxic mixed cultures

(2008) Nico Jehmlich et al.   ISME Journal

Incorporation of carbon and nitrogen atoms into proteins measured by protein-based stable isotope probing (Protein-SIP)

(2008) Nico Jehmlich et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

DNA-based stable isotope probing: a link between community structure and function

(2008) Ondrej Uhlík et al.   SCIENCE OF THE TOTAL ENVIRONMENT