Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea

Heterotrophic Archaea Contribute to Carbon Cycling in Low-pH, Suboxic Biofilm Communities

(2012) Nicholas B. Justice et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Archaeal diversity in a terrestrial acidic spring field revealed by a novel PCR primer targeting archaeal 16S rRNA genes

(2011) Shingo Kato et al.   FEMS MICROBIOLOGY LETTERS

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities

(2011) Priya Narasingarao et al.   ISME Journal

Community genomic analysis of an extremely acidophilic sulfur-oxidizing biofilm

(2011) Daniel S Jones et al.   ISME Journal

Genome Analyses of Icelandic Strains of Sulfolobus islandicus, Model Organisms for Genetic and Virus-Host Interaction Studies

(2011) L. Guo et al.   JOURNAL OF BACTERIOLOGY

Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins

(2011) E. E. Hansen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of a Novel Class of Membrane-Bound [NiFe]-Hydrogenases in Thermococcus onnurineus NA1 by In Silico Analysis

(2010) J. K. Lim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Correlating carbon monoxide oxidation with cox genes in the abundant Marine Roseobacter Clade

(2010) Michael Cunliffe   ISME Journal

Quantitative Proteome and Transcriptome Analysis of the ArchaeonThermoplasma acidophilumCultured under Aerobic and Anaerobic Conditions

(2010) Na Sun et al.   JOURNAL OF PROTEOME RESEARCH

New Structural Proteins ofHalobacterium salinarumGas Vesicle Revealed by Comparative Proteomics Analysis

(2010) Lichieh Julie Chu et al.   JOURNAL OF PROTEOME RESEARCH

Formate-driven growth coupled with H2 production

(2010) Yun Jae Kim et al.   NATURE

Metagenomes from High-Temperature Chemotrophic Systems Reveal Geochemical Controls on Microbial Community Structure and Function

(2010) William P. Inskeep et al.   PLoS One

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Enigmatic, ultrasmall, uncultivated Archaea

(2010) B. J. Baker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities

(2010) V. J. Denef et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Community Genomic and Proteomic Analyses of Chemoautotrophic Iron-Oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) Bacteria in Acid Mine Drainage Biofilms

(2009) D. S. A. Goltsman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Nonphosphorylative Entner-Doudoroff Pathway in the Thermoacidophilic Euryarchaeon Picrophilus torridus Involves a Novel 2-Keto-3-Deoxygluconate- Specific Aldolase

(2009) M. Reher et al.   JOURNAL OF BACTERIOLOGY

Acyl-CoA Dehydrogenases: Dynamic History of Protein Family Evolution

(2009) Zuzana Swigoňová et al.   JOURNAL OF MOLECULAR EVOLUTION

Mapping the Tree of Life: Progress and Prospects

(2009) N. R. Pace   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Biogeography of the Sulfolobus islandicus pan-genome

(2009) M. L. Reno et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial Communities in Contaminated Sediments, Associated with Bioremediation of Uranium to Submicromolar Levels

(2008) E. Cardenas et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

The rus Operon Genes Are Differentially Regulated When Acidithiobacillus ferrooxidans LR is Kept in Contact with Metal Sulfides

(2008) Camila Carlos et al.   CURRENT MICROBIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Electron microscopy encounters with unusual thermophiles helps direct genomic analysis of Aciduliprofundum boonei

(2008) A.-L. REYSENBACH et al.   Geobiology

Natural acidophilic biofilm communities reflect distinct organismal and functional organization

(2008) Paul Wilmes et al.   ISME Journal

Isolation and characterization ofFerroplasma thermophilumsp. nov., a novel extremely acidophilic, moderately thermophilic archaeon and its role in bioleaching of chalcopyrite

(2008) H. Zhou et al.   JOURNAL OF APPLIED MICROBIOLOGY

A New Iron-oxidizing/O2-reducing Supercomplex Spanning Both Inner and Outer Membranes, Isolated from the Extreme AcidophileAcidithiobacillus ferrooxidans

(2008) Cindy Castelle et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Structure of F-Pili

(2008) Ying A. Wang et al.   JOURNAL OF MOLECULAR BIOLOGY