Complex communities of small protists and unexpected occurrence of typical marine lineages in shallow freshwater systems

The rise and fall of Picobiliphytes: How assumed autotrophs turned out to be heterotrophs

(2014) David Moreira et al.   BIOESSAYS

Osmotolerance in the Cryptophyceae: Jacks-of-all-trades in the Chroomonas Clade

(2014) Kerstin Hoef-Emden   PROTIST

Morphology, phylogeny, and ecology of the aphelids (Aphelidea, Opisthokonta) and proposal for the new superphylum Opisthosporidia

(2014) Sergey A. Karpov et al.   Frontiers in Microbiology

Geographic distance and ecosystem size determine the distribution of smallest protists in lacustrine ecosystems

(2013) Cécile Lepère et al.   FEMS MICROBIOLOGY ECOLOGY

A global perspective on marine photosynthetic picoeukaryote community structure

(2013) Amy R Kirkham et al.   ISME Journal

Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles

(2013) Ramon Massana et al.   ISME Journal

Picomonas judraskeda Gen. Et Sp. Nov.: The First Identified Member of the Picozoa Phylum Nov., a Widespread Group of Picoeukaryotes, Formerly Known as ‘Picobiliphytes’

(2013) Ramkumar Seenivasan et al.   PLoS One

Phylogenetic Affiliation of SSU rRNA Genes Generated by Massively Parallel Sequencing: New Insights into the Freshwater Protist Diversity

(2013) Najwa Taib et al.   PLoS One

Genetic diversity of planktonic eukaryotes in high mountain lakes (Central Pyrenees, Spain)

(2012) Xavier Triadó-Margarit et al.   ENVIRONMENTAL MICROBIOLOGY

Short-term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes

(2012) Jean-François Mangot et al.   ENVIRONMENTAL MICROBIOLOGY

Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study

(2012) Charles Bachy et al.   ISME Journal

The Revised Classification of Eukaryotes

(2012) Sina M. Adl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Different biogeographic patterns of prokaryotes and microbial eukaryotes in epilithic biofilms

(2012) MARIE RAGON et al.   MOLECULAR ECOLOGY

Eukaryotic phylotypes in aquatic moss pillars inhabiting a freshwater lake in East Antarctica, based on 18S rRNA gene analysis

(2012) Ryosuke Nakai et al.   POLAR BIOLOGY

Mixotrophic basis of Atlantic oligotrophic ecosystems

(2012) M. Hartmann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plankton Microorganisms Coinciding with Two Consecutive Mass Fish Kills in a Newly Reconstructed Lake

(2012) Andreas Oikonomou et al.   TheScientificWorldJOURNAL

New haptophyte lineages and multiple independent colonizations of freshwater ecosystems

(2012) Marianne Simon et al.   Environmental Microbiology Reports

Pyrosequencing analysis of the protist communities in a High Arctic meromictic lake: DNA preservation and change

(2012) Sophie Charvet et al.   Frontiers in Microbiology

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Genetic diversity of picoeukaryotes in eight lakes differing in trophic status

(2011) Biying Zhao et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Exploring and quantifying fungal diversity in freshwater lake ecosystems using rDNA cloning/sequencing and SSU tag pyrosequencing

(2011) Sébastien Monchy et al.   ENVIRONMENTAL MICROBIOLOGY

Marine-Freshwater Colonizations of Haptophytes Inferred from Phylogeny of Environmental 18S rDNA Sequences

(2011) KAMRAN SHALCHIAN-TABRIZI et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Discovery of novel intermediate forms redefines the fungal tree of life

(2011) Meredith D. M. Jones et al.   NATURE

Novel Cultured Protists Identify Deep-branching Environmental DNA Clades of Cercozoa: New Genera Tremula, Micrometopion, Minimassisteria, Nudifila, Peregrinia

(2011) Alexis T. Howe et al.   PROTIST

Eukaryotic Picoplankton in Surface Oceans

(2010) Ramon Massana   Annual Review of Microbiology

Solenicola setigera is the first characterized member of the abundant and cosmopolitan uncultured marine stramenopile group MAST-3

(2010) Fernando Gómez et al.   ENVIRONMENTAL MICROBIOLOGY

Spatio-temporal variations in protistan communities along an O2/H2S gradient in the anoxic Framvaren Fjord (Norway)

(2010) Anke Behnke et al.   FEMS MICROBIOLOGY ECOLOGY

Molecular and microscopic diversity of planktonic eukaryotes in the oligotrophic Lake Stechlin (Germany)

(2010) W. Luo et al.   HYDROBIOLOGIA

Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA

(2010) Jon Bråte et al.   ISME Journal

Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 pyrosequencing

(2010) Man Kit Cheung et al.   ISME Journal

Significant CO2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean

(2010) Ludwig Jardillier et al.   ISME Journal

Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity

(2010) VIOLA NOLTE et al.   MOLECULAR ECOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Highly Diverse and Seasonally Dynamic Protist Community in a Pristine Peat Bog

(2010) Enrique Lara et al.   PROTIST

Groups without Cultured Representatives Dominate Eukaryotic Picophytoplankton in the Oligotrophic South East Pacific Ocean

(2009) Xiao Li Shi et al.   PLoS One

Large-scale patterns in biodiversity of microbial eukaryotes from the abyssal sea floor

(2009) F. Scheckenbach et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Environmental Clade LKM11 and Rozella Form the Deepest Branching Clade of Fungi

(2009) Enrique Lara et al.   PROTIST

Infrequent marine–freshwater transitions in the microbial world

(2009) Ramiro Logares et al.   TRENDS IN MICROBIOLOGY

Unexpected Importance of Potential Parasites in the Composition of the Freshwater Small-Eukaryote Community

(2008) C. Lepere et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Widespread occurrence and genetic diversity of marine parasitoids belonging toSyndiniales(Alveolata)

(2008) L. Guillou et al.   ENVIRONMENTAL MICROBIOLOGY

Changes in microbial community structure in the wake of Hurricanes Katrina and Rita

(2008) Linda A. Amaral-Zettler et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

High bacterivory by the smallest phytoplankton in the North Atlantic Ocean

(2008) Mikhail V. Zubkov et al.   NATURE

The Molecular Diversity of Freshwater Picoeukaryotes Reveals High Occurrence of Putative Parasitoids in the Plankton

(2008) Emilie Lefèvre et al.   PLoS One

Phylogeny of Novel Naked Filose and Reticulose Cercozoa: Granofilosea cl. n. and Proteomyxidea Revised

(2008) David Bass et al.   PROTIST

Tracking microbial biodiversity through molecular and genomic ecology

(2007) Purificación López-García et al.   RESEARCH IN MICROBIOLOGY