Phylogenetic Affiliation of SSU rRNA Genes Generated by Massively Parallel Sequencing: New Insights into the Freshwater Protist Diversity
出版年份 2013 全文链接
标题
Phylogenetic Affiliation of SSU rRNA Genes Generated by Massively Parallel Sequencing: New Insights into the Freshwater Protist Diversity
作者
关键词
-
出版物
PLoS One
Volume 8, Issue 3, Pages e58950
出版商
Public Library of Science (PLoS)
发表日期
2013-03-15
DOI
10.1371/journal.pone.0058950
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Short-term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes
- (2012) Jean-François Mangot et al. ENVIRONMENTAL MICROBIOLOGY
- Quality-Score Refinement of SSU rRNA Gene Pyrosequencing Differs Across Gene Region for Environmental Samples
- (2012) Kara Bowen De León et al. MICROBIAL ECOLOGY
- Sequencing our way towards understanding global eukaryotic biodiversity
- (2012) Holly M. Bik et al. TRENDS IN ECOLOGY & EVOLUTION
- On the suitability of short reads of 16S rRNA for phylogeny-based analyses in environmental surveys
- (2011) Patricio Jeraldo et al. ENVIRONMENTAL MICROBIOLOGY
- Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes
- (2011) Thomas M. Gihring et al. ENVIRONMENTAL MICROBIOLOGY
- Exploring and quantifying fungal diversity in freshwater lake ecosystems using rDNA cloning/sequencing and SSU tag pyrosequencing
- (2011) Sébastien Monchy et al. ENVIRONMENTAL MICROBIOLOGY
- Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys
- (2011) Jeffrey J Werner et al. ISME Journal
- Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness
- (2011) Virginia Edgcomb et al. ISME Journal
- Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments
- (2011) HOLLY M. BIK et al. MOLECULAR ECOLOGY
- Discovery of novel intermediate forms redefines the fungal tree of life
- (2011) Meredith D. M. Jones et al. NATURE
- Eukaryotic Richness in the Abyss: Insights from Pyrotag Sequencing
- (2011) Jan Pawlowski et al. PLoS One
- Activity of abundant and rare bacteria in a coastal ocean
- (2011) B. J. Campbell et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Newest Synthesis: Understanding the Interplay of Evolutionary and Ecological Dynamics
- (2011) T. W. Schoener SCIENCE
- Molecular characterisation of the small-eukaryote community in a tropical Great Lake (Lake Tanganyika, East Africa)
- (2010) AL Tarbe et al. AQUATIC MICROBIAL ECOLOGY
- Parasitic fungi of phytoplankton: ecological roles and implications for microbial food webs
- (2010) S Rasconi et al. AQUATIC MICROBIAL ECOLOGY
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Introducing W.A.T.E.R.S.: a Workflow for the Alignment, Taxonomy, and Ecology of Ribosomal Sequences
- (2010) Amber L Hartman et al. BMC BIOINFORMATICS
- VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences
- (2010) Hiroshi Mori et al. BMC BIOINFORMATICS
- pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
- (2010) Frederick A Matsen et al. BMC BIOINFORMATICS
- Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions
- (2010) Anke Behnke et al. ENVIRONMENTAL MICROBIOLOGY
- Perkinsozoa, a well-known marine protozoan flagellate parasite group, newly identified in lacustrine systems: a review
- (2010) Jean-François Mangot et al. HYDROBIOLOGIA
- Vertical structure of small eukaryotes in three lakes that differ by their trophic status: a quantitative approach
- (2010) Cecile Lepère et al. ISME Journal
- Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 pyrosequencing
- (2010) Man Kit Cheung et al. ISME Journal
- PANGEA: pipeline for analysis of next generation amplicons
- (2010) Adriana Giongo et al. ISME Journal
- Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes
- (2010) Minseok Kim et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity
- (2010) VIOLA NOLTE et al. MOLECULAR ECOLOGY
- Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
- (2010) THORSTEN STOECK et al. MOLECULAR ECOLOGY
- Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms
- (2010) RALPH MEDINGER et al. MOLECULAR ECOLOGY
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies
- (2010) Patrick D. Schloss PLoS Computational Biology
- Defining DNA-Based Operational Taxonomic Units for Microbial-Eukaryote Ecology
- (2009) D. A. Caron et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities
- (2009) Thorsten Stoeck et al. BMC BIOLOGY
- Microbial community structure in the North Pacific ocean
- (2009) Mark V Brown et al. ISME Journal
- FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
- (2009) M. N. Price et al. MOLECULAR BIOLOGY AND EVOLUTION
- New Insights into the Diversity of Marine Picoeukaryotes
- (2009) Fabrice Not et al. PLoS One
- Ecology of the rare microbial biosphere of the Arctic Ocean
- (2009) Pierre E. Galand et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Molecular Phylogeny and Classification of the Mamiellophyceae class. nov. (Chlorophyta) based on Sequence Comparisons of the Nuclear- and Plastid-encoded rRNA Operons
- (2009) Birger Marin et al. PROTIST
- Unexpected Importance of Potential Parasites in the Composition of the Freshwater Small-Eukaryote Community
- (2008) C. Lepere et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
- (2008) Z. Liu et al. NUCLEIC ACIDS RESEARCH
- The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
- (2008) J. R. Cole et al. NUCLEIC ACIDS RESEARCH
- An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP)
- (2008) Dongying Wu et al. PLoS One
- Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing
- (2008) Anders F. Andersson et al. PLoS One
- Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing
- (2008) Susan M. Huse et al. PLoS Genetics
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started