The long-term adaptation of bacterial communities in metal-contaminated sediments: a metaproteogenomic study

Bacterial metal resistance genes and metal bioavailability in contaminated sediments

(2014) Stéphanie Roosa et al.   ENVIRONMENTAL POLLUTION

The Pseudomonas community in metal-contaminated sediments as revealed by quantitative PCR: a link with metal bioavailability

(2014) Stéphanie Roosa et al.   RESEARCH IN MICROBIOLOGY

Cadmium increases catechol 2,3-dioxygenase activity in Variovorax sp. 12S, a metal-tolerant and phenol-degrading strain

(2013) Katarzyna Hupert-Kocurek et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Shifts in microbial community composition and function in the acidification of a lead/zinc mine tailings

(2013) Lin-xing Chen et al.   ENVIRONMENTAL MICROBIOLOGY

Understanding Bacteriophage Specificity in Natural Microbial Communities

(2013) Britt Koskella et al.   Viruses-Basel

Microbiota's 'little helpers': bacteriophages and antibiotic-associated responses in the gut microbiome

(2013) Christine L Sun et al.   GENOME BIOLOGY

Integrated metagenomic and metaproteomic analyses of an ANME-1-dominated community in marine cold seep sediments

(2012) Runar Stokke et al.   ENVIRONMENTAL MICROBIOLOGY

Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation

(2012) María-Eugenia Guazzaroni et al.   ISME Journal

Metaproteogenomic analysis of a community of sponge symbionts

(2012) Michael Liu et al.   ISME Journal

Biosequestration, Transformation, and Volatilization of Mercury by Lysinibacillus fusiformis Isolated from Industrial Effluent

(2012) Saurabh Gupta   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Diversity and dynamics of rare and of resident bacterial populations in coastal sands

(2011) Angélique Gobet et al.   ISME Journal

Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics

(2011) Philippe N Bertin et al.   ISME Journal

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

(2011) Claudia Knief et al.   ISME Journal

Links between bacterial communities in marine sediments and trace metal geochemistry as measured by in situ DET/DGT approaches

(2011) David C. Gillan et al.   MARINE POLLUTION BULLETIN

PhymmBL expanded: confidence scores, custom databases, parallelization and more

(2011) Arthur Brady et al.   NATURE METHODS

A Novel Acyl-CoA Beta-Transaminase Characterized from a Metagenome

(2011) Alain Perret et al.   PLoS One

Taxonomic and functional prokaryote diversity in mildly arsenic-contaminated sediments

(2011) David Halter et al.   RESEARCH IN MICROBIOLOGY

On metal diagenesis in contaminated sediments of the Deûle river (northern France)

(2010) L. Lesven et al.   APPLIED GEOCHEMISTRY

Identifying biologically relevant differences between metagenomic communities

(2010) Donovan H. Parks et al.   BIOINFORMATICS

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

Automatic trace metal monitoring station use for early warning and short term events in polluted rivers: application to streams loaded by mining tailing

(2010) Beatriz Lourino-Cabana et al.   JOURNAL OF ENVIRONMENTAL MONITORING

The Complete Genome Sequence of Cupriavidus metallidurans Strain CH34, a Master Survivalist in Harsh and Anthropogenic Environments

(2010) Paul J. Janssen et al.   PLoS One

Achievements and new knowledge unraveled by metagenomic approaches

(2009) Carola Simon et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Analysis and comparison of very large metagenomes with fast clustering and functional annotation

(2009) Weizhong Li   BMC BIOINFORMATICS

Temporal bacterial diversity associated with metal-contaminated river sediments

(2009) Nicholas J. Bouskill et al.   ECOTOXICOLOGY

Experimental design and environmental parameters affect Rhodospirillum rubrum S1H response to space flight

(2009) Felice Mastroleo et al.   ISME Journal

Systematic artifacts in metagenomes from complex microbial communities

(2009) Vicente Gomez-Alvarez et al.   ISME Journal

Geochemical behavior of trace elements in sub-tidal marine sediments of the Belgian coast

(2009) Yue Gao et al.   MARINE CHEMISTRY

Microbial Protein in Soil: Influence of Extraction Method and C Amendment on Extraction and Recovery

(2009) Erin B. Taylor et al.   MICROBIAL ECOLOGY

The microbial ocean from genomes to biomes

(2009) Edward F. DeLong   NATURE

Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models

(2009) Arthur Brady et al.   NATURE METHODS

Environmental proteomics: Analysis of structure and function of microbial communities

(2009) Thomas Schneider et al.   PROTEOMICS

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

TEM evidence for intracellular accumulation of lead by bacteria in subsurface environments

(2008) Nicolas Perdrial et al.   CHEMICAL GEOLOGY

Metagenomics for Mining New Genetic Resources of Microbial Communities

(2008) Manuel Ferrer et al.   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment

(2008) J. F. Biddle et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE

Linking pollution induced community tolerance (PICT) and microbial community structure in chronically metal polluted estuarine sediments

(2007) Lesley A Ogilvie et al.   MARINE ENVIRONMENTAL RESEARCH