Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation

Long-term simulation of in situ biostimulation of polycyclic aromatic hydrocarbon-contaminated soil

(2012) Stephen D. Richardson et al.   BIODEGRADATION

Microbial activity and diversity in long-term mixed contaminated soils with respect to polyaromatic hydrocarbons and heavy metals

(2012) Palanisami Thavamani et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Bacteria-mediated PAH degradation in soil and sediment

(2011) Xiao-Ying Lu et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales

(2011) Danilo Pérez-Pantoja et al.   ENVIRONMENTAL MICROBIOLOGY

Betaproteobacteria dominance and diversity shifts in the bacterial community of a PAH-contaminated soil exposed to phenanthrene

(2011) Florence Martin et al.   ENVIRONMENTAL POLLUTION

Complete Genome Sequence of the Type Strain Pseudomonas stutzeri CGMCC 1.1803

(2011) M. Chen et al.   JOURNAL OF BACTERIOLOGY

Evolution of bacterial community during bioremediation of PAHs in a coal tar contaminated soil

(2010) Christine Lors et al.   CHEMOSPHERE

Complete Genomic Structure of the Cultivated Rice Endophyte Azospirillum sp. B510

(2010) T. Kaneko et al.   DNA RESEARCH

Metabolic networks, microbial ecology and ‘omics’ technologies: towards understanding in situ biodegradation processes

(2010) Ramiro Vilchez-Vargas et al.   ENVIRONMENTAL MICROBIOLOGY

Functional gene diversity of soil microbial communities from five oil-contaminated fields in China

(2010) Yuting Liang et al.   ISME Journal

Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community

(2010) Christopher L Hemme et al.   ISME Journal

Analysis and comparison of very large metagenomes with fast clustering and functional annotation

(2009) Weizhong Li   BMC BIOINFORMATICS

Subsurface ecosystem resilience: long-term attenuation of subsurface contaminants supports a dynamic microbial community

(2009) Jane M Yagi et al.   ISME Journal

Combined Genomic and Proteomic Approaches Identify Gene Clusters Involved in Anaerobic 2-Methylnaphthalene Degradation in the Sulfate-Reducing Enrichment Culture N47

(2009) D. Selesi et al.   JOURNAL OF BACTERIOLOGY

Structure and Complexity of a Bacterial Transcriptome

(2009) K. D. Passalacqua et al.   JOURNAL OF BACTERIOLOGY

Comparison of archaeal and bacterial community structures in heavily oil-contaminated and pristine soils

(2009) Ruyin Liu et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Extremely halophilic microbial communities in anaerobic sediments from a solar saltern

(2009) Arantxa López-López et al.   Environmental Microbiology Reports

A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory

(2008) Juan Nogales et al.   BMC Systems Biology

Effects of Enrichment with Salicylate on Bacterial Selection and PAH Mineralization in a Microbial Community from a Bioreactor Treating Contaminated Soil

(2008) Sabrina N. Powell et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Metabolic and bacterial diversity in soils historically contaminated by heavy metals and hydrocarbons

(2008) Astrid Vivas et al.   JOURNAL OF ENVIRONMENTAL MONITORING

Deciphering the genetic determinants for aerobic nicotinic acid degradation: The nic cluster from Pseudomonas putida KT2440

(2008) J. I. Jimenez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains

(2008) Pablo Yarza et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology

(2008) Jacek Puchałka et al.   PLoS Computational Biology