Towards a taxonomy of Bacteria and Archaea based on interactive and cumulative data repositories

Response to adverse conditions in two strains of the extremely halophilic species Salinibacter ruber

(2011) Jocelyn Brito-Echeverría et al.   EXTREMOPHILES

Proteomics for routine identification of microorganisms

(2011) Martin Welker   PROTEOMICS

Bacterial species identification from MALDI-TOF mass spectra through data analysis and machine learning

(2011) Katrien De Bruyne et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Evaluation of matrix-assisted laser desorption ionization-time of flight whole cell profiles for assessing the cultivable diversity of aerobic and moderately halophilic prokaryotes thriving in solar saltern sediments

(2011) Raul Munoz et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

MALDI-TOF MS: A return to phenotyping in microbial identification?

(2011) Edward R.B. Moore et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Applications of whole-cell matrix-assisted laser-desorption/ionization time-of-flight mass spectrometry in systematic microbiology

(2011) Martin Welker et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

PseudoMLSA: a database for multigenic sequence analysis of Pseudomonas species

(2010) Antoni Bennasar et al.   BMC MICROBIOLOGY

Differentiation of Bifidobacterium species using partial RNA polymerase  -subunit (rpoB) gene sequences

(2010) B. J. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

A Catalog of Reference Genomes from the Human Microbiome

(2010) et al.   SCIENCE

Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses

(2010) Pablo Yarza et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Single cell analysis: the new frontier in ‘omics’

(2010) Daojing Wang et al.   TRENDS IN BIOTECHNOLOGY

Assigning strains to bacterial species via the internet

(2009) Cynthia J Bishop et al.   BMC BIOLOGY

Further refinement of the phylogeny of the Halobacteriaceae based on the full-length RNA polymerase subunit B' (rpoB') gene

(2009) H. Minegishi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Notes on the characterization of prokaryote strains for taxonomic purposes

(2009) B. J. Tindall et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

(2009) Dongying Wu et al.   NATURE

Metabolomics Reveals Metabolic Biomarkers of Crohn's Disease

(2009) Janet Jansson et al.   PLoS One

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Classification of Bacteria and Archaea: Past, present and future

(2009) Karl Heinz Schleifer   SYSTEMATIC AND APPLIED MICROBIOLOGY

Metabolic evidence for biogeographic isolation of the extremophilic bacterium Salinibacter ruber

(2008) Ramon Rosselló-Mora et al.   ISME Journal

A Genomic Distance Based on MUM Indicates Discontinuity between Most Bacterial Species and Genera

(2008) M. Deloger et al.   JOURNAL OF BACTERIOLOGY

Gas chromatographic metabolic profiling: A sensitive tool for functional microbial ecology

(2008) Elsa Coucheney et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Estimation of Phylogenetic Inconsistencies in the Three Domains of Life

(2008) V. Soria-Carrasco et al.   MOLECULAR BIOLOGY AND EVOLUTION

MassTRIX: mass translator into pathways

(2008) K. Suhre et al.   NUCLEIC ACIDS RESEARCH

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics

(2008) A. Koeppel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes

(2008) Jörg Peplies et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains

(2008) Pablo Yarza et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY