Peeling Back the Evolutionary Layers of Molecular Mechanisms Responsive to Exercise-Stress in the Skeletal Muscle of the Racing Horse

Utilizing RNA-Seq data for de novo coexpression network inference

(2012) Ovidiu D. Iancu et al.   BIOINFORMATICS

rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure

(2012) Mathieu Gautier et al.   BIOINFORMATICS

Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq

(2012) Kyung-Do Park et al.   BMC GENOMICS

Exercise-induced muscle-derived cytokines inhibit mammary cancer cell growth

(2011) Pernille Hojman et al.   AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM

Population studies of 17 equine STR for forensic and phylogenetic analysis

(2011) L. H. P. van de Goor et al.   ANIMAL GENETICS

Footprints of selection in the ancestral admixture of a New World Creole cattle breed

(2011) MATHIEU GAUTIER et al.   MOLECULAR ECOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Evaluation of the genetic diversity and population structure of Chinese indigenous horse breeds using 27 microsatellite markers

(2010) Y. H. Ling et al.   ANIMAL GENETICS

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Characterization of the equine skeletal muscle transcriptome identifies novel functional responses to exercise training

(2010) Beatrice A McGivney et al.   BMC GENOMICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Effects of Resistance or Aerobic Exercise Training on Interleukin-6, C-Reactive Protein, and Body Composition

(2010) CHEYNE E. DONGES et al.   MEDICINE AND SCIENCE IN SPORTS AND EXERCISE

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Simultaneous Genotype Calling and Haplotype Phasing Improves Genotype Accuracy and Reduces False-Positive Associations for Genome-wide Association Studies

(2009) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Transcriptional adaptations following exercise in Thoroughbred horse skeletal muscle highlights molecular mechanisms that lead to muscle hypertrophy

(2009) Beatrice A McGivney et al.   BMC GENOMICS

STAT3 induces muscle stem cell differentiation by interaction with myoD

(2009) Yanping Yang et al.   CYTOKINE

Edward F. Adolph Distinguished Lecture: Muscle as an endocrine organ: IL-6 and other myokines

(2009) Bente K. Pedersen   JOURNAL OF APPLIED PHYSIOLOGY

Genome-wide scans for footprints of natural selection

(2009) T. K. Oleksyk et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Genome Scan for Positive Selection in Thoroughbred Horses

(2009) Jingjing Gu et al.   PLoS One

The Earliest Horse Harnessing and Milking

(2009) A. K. Outram et al.   SCIENCE

Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse

(2009) C. M. Wade et al.   SCIENCE

Toll-like receptors (TLRs) and Nod-like receptors (NLRs) in inflammatory disorders

(2009) Masayuki Fukata et al.   SEMINARS IN IMMUNOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution

(2008) D. Allan Drummond et al.   CELL

JAK2/STAT2/STAT3 Are Required for Myogenic Differentiation

(2008) Kepeng Wang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

An approach of orthology detection from homologous sequences under minimum evolution

(2008) Kyung Mo Kim et al.   NUCLEIC ACIDS RESEARCH

Role of p53 in mitochondrial biogenesis and apoptosis in skeletal muscle

(2008) Ayesha Saleem et al.   PHYSIOLOGICAL GENOMICS

Muscle as an Endocrine Organ: Focus on Muscle-Derived Interleukin-6

(2008) Bente K. Pedersen et al.   PHYSIOLOGICAL REVIEWS

Mechano-regulated Tenascin-C orchestrates muscle repair

(2008) M. Fluck et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA