Genomics and Functional Genomics of Winter Low Temperature Tolerance in Temperate Fruit Crops

Heat shock transcriptional factors in Malus domestica: identification, classification and expression analysis

(2012) Filomena Giorno et al.   BMC GENOMICS

Genome wide identification of chilling responsive microRNAs in Prunus persica

(2012) Abdelali Barakat et al.   BMC GENOMICS

Identification of the dehydrin gene family from grapevine species and analysis of their responsiveness to various forms of abiotic and biotic stress

(2012) Yazhou Yang et al.   BMC PLANT BIOLOGY

Transcriptome variation along bud development in grapevine (Vitis vinifera L.)

(2012) José Díaz-Riquelme et al.   BMC PLANT BIOLOGY

The cold-induced basic helix-loop-helix transcription factor gene MdCIbHLH1 encodes an ICE-like protein in apple

(2012) Xiao-Ming Feng et al.   BMC PLANT BIOLOGY

Generation and analysis of blueberry transcriptome sequences from leaves, developing fruit, and flower buds from cold acclimation through deacclimation

(2012) Lisa J Rowland et al.   BMC PLANT BIOLOGY

The use of metabolomics to dissect plant responses to abiotic stresses

(2012) Toshihiro Obata et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

The genome of the pear (Pyrus bretschneideri Rehd.)

(2012) J. Wu et al.   GENOME RESEARCH

Genetic analysis of metabolites in apple fruits indicates an mQTL hotspot for phenolic compounds on linkage group 16

(2012) Sabaz Ali Khan et al.   JOURNAL OF EXPERIMENTAL BOTANY

Cold acclimation and floral development in almond bud break: insights into the regulatory pathways

(2012) Pedro M Barros et al.   JOURNAL OF EXPERIMENTAL BOTANY

Characterization of grape C-repeat-binding factor 2 and B-box-type zinc finger protein in transgenic Arabidopsis plants under stress conditions

(2012) Masayuki Kobayashi et al.   MOLECULAR BIOLOGY REPORTS

Genome-wide identification and expression profiling of dehydrin gene family in Malus domestica

(2012) Dong Liang et al.   MOLECULAR BIOLOGY REPORTS

Overexpression of a blueberry-derived CBF gene enhances cold tolerance in a southern highbush blueberry cultivar

(2012) Aaron E. Walworth et al.   MOLECULAR BREEDING

Genome-wide analysis and expression profiling of the DREB transcription factor gene family in Malus under abiotic stress

(2012) Tao Zhao et al.   MOLECULAR GENETICS AND GENOMICS

Differential expression of proteins associated with seasonal bud dormancy at four critical stages in Japanese apricot

(2012) W.-B. Zhuang et al.   PLANT BIOLOGY

The Grapevine Expression Atlas Reveals a Deep Transcriptome Shift Driving the Entire Plant into a Maturation Program

(2012) M. Fasoli et al.   PLANT CELL

The multifaceted roles of FLOWERING LOCUS T in plant development

(2012) P. A. PIN et al.   PLANT CELL AND ENVIRONMENT

The dynamic nature of bud dormancy in trees: environmental control and molecular mechanisms

(2012) JANICE E. K. COOKE et al.   PLANT CELL AND ENVIRONMENT

Molecular cloning and functional characterization of a novel apple MdCIPK6L gene reveals its involvement in multiple abiotic stress tolerance in transgenic plants

(2012) Rong-Kai Wang et al.   PLANT MOLECULAR BIOLOGY

Physiological and molecular changes in plants grown at low temperatures

(2012) Andreas Theocharis et al.   PLANTA

Photoperiodic regulation of the C-repeat binding factor (CBF) cold acclimation pathway and freezing tolerance in Arabidopsis thaliana

(2012) C.-M. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The peach genome

(2012) Pere Arús et al.   Tree Genetics & Genomes

Functional characterization of two almond C-repeat-binding factors involved in cold response

(2012) P. M. Barros et al.   TREE PHYSIOLOGY

Transcriptome analysis of chestnut (Castanea sativa) tree buds suggests a putative role for epigenetic control of bud dormancy

(2011) María Estrella Santamaría et al.   ANNALS OF BOTANY

Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera

(2011) Francesco Licausi et al.   BMC GENOMICS

Expressional regulation of PpDAM5 and PpDAM6, peach (Prunus persica) dormancy-associated MADS-box genes, by low temperature and dormancy-breaking reagent treatment

(2011) H. Yamane et al.   JOURNAL OF EXPERIMENTAL BOTANY

Histone modifications and expression of DAM6 gene in peach are modulated during bud dormancy release in a cultivar-dependent manner

(2011) Carmen Leida et al.   NEW PHYTOLOGIST

The Vitis vinifera C-repeat binding protein 4 (VvCBF4) transcriptional factor enhances freezing tolerance in wine grape

(2011) Richard L. Tillett et al.   PLANT BIOTECHNOLOGY JOURNAL

Vitis CBF1 and Vitis CBF4 differ in their effect on Arabidopsis abiotic stress tolerance, development and gene expression

(2011) MAHBUBA SIDDIQUA et al.   PLANT CELL AND ENVIRONMENT

Genome-wide analysis of the SET DOMAIN GROUP family in Grapevine

(2011) Felipe Aquea et al.   PLANT CELL REPORTS

ICE1 Ser403 is necessary for protein stabilization and regulation of cold signaling and tolerance

(2011) Kenji Miura et al.   PLANT JOURNAL

Functional and Expressional Analyses of PmDAM Genes Associated with Endodormancy in Japanese Apricot

(2011) Ryuta Sasaki et al.   PLANT PHYSIOLOGY

Ectopic expression of a novel peach (Prunus persica) CBF transcription factor in apple (Malus × domestica) results in short-day induced dormancy and increased cold hardiness

(2011) Michael Wisniewski et al.   PLANTA

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

CIRCADIAN CLOCK-ASSOCIATED 1 and LATE ELONGATED HYPOCOTYL regulate expression of the C-REPEAT BINDING FACTOR (CBF) pathway in Arabidopsis

(2011) M. A. Dong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Towards the adaptation of grapevine varieties to climate change: QTLs and candidate genes for developmental stages

(2011) Eric Duchêne et al.   THEORETICAL AND APPLIED GENETICS

Identification of genes associated with growth cessation and bud dormancy entrance using a dormancy-incapable tree mutant

(2010) Sergio Jiménez et al.   BMC PLANT BIOLOGY

Low-temperature-induced transcription factors in grapevine enhance cold tolerance in transgenic Arabidopsis plants

(2010) Yuki Takuhara et al.   JOURNAL OF PLANT PHYSIOLOGY

Decoding the Epigenetic Language of Plant Development

(2010) Ayaz Ahmad et al.   Molecular Plant

The genome of Theobroma cacao

(2010) Xavier Argout et al.   NATURE GENETICS

The genome of woodland strawberry (Fragaria vesca)

(2010) Vladimir Shulaev et al.   NATURE GENETICS

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

Temperature-driven plasticity in growth cessation and dormancy development in deciduous woody plants: a working hypothesis suggesting how molecular and cellular function is affected by temperature during dormancy induction

(2010) Karen K. Tanino et al.   PLANT MOLECULAR BIOLOGY

Gene expression of DAM5 and DAM6 is suppressed by chilling temperatures and inversely correlated with bud break rate

(2010) S. Jiménez et al.   PLANT MOLECULAR BIOLOGY

Molecular Basis of Plant Cold Acclimation: Insights Gained from Studying the CBF Cold Response Pathway

(2010) M. F. Thomashow   PLANT PHYSIOLOGY

Dwarf apple MbDREB1 enhances plant tolerance to low temperature, drought, and salt stress via both ABA-dependent and ABA-independent pathways

(2010) Wei Yang et al.   PLANTA

Interaction with Diurnal and Circadian Regulation Results in Dynamic Metabolic and Transcriptional Changes during Cold Acclimation in Arabidopsis

(2010) Carmen Espinoza et al.   PLoS One

Proteomic analysis of shoot tissue during photoperiod induced growth cessation in V. riparia Michx. grapevines

(2010) Kim J Victor et al.   Proteome Science

Identification of genes associated with bud dormancy release in Prunus persica by suppression subtractive hybridization

(2010) C. Leida et al.   TREE PHYSIOLOGY

Genetic linkage mapping for molecular dissection of chilling requirement and budbreak in apricot (Prunus armeniaca L.)

(2009) Bode A. Olukolu et al.   GENOME

A Calcium/Calmodulin-regulated Member of the Receptor-like Kinase Family Confers Cold Tolerance in Plants

(2009) Tianbao Yang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Dormancy-associated MADS genes from the EVG locus of peach [Prunus persica (L.) Batsch] have distinct seasonal and photoperiodic expression patterns

(2009) Z. Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mapping quantitative trait loci associated with chilling requirement, heat requirement and bloom date in peach (Prunus persica)

(2009) Shenghua Fan et al.   NEW PHYTOLOGIST

Cold stress and acclimation - what is important for metabolic adjustment?

(2009) A. Janská et al.   PLANT BIOLOGY

Roles for Arabidopsis CAMTA Transcription Factors in Cold-Regulated Gene Expression and Freezing Tolerance

(2009) C. J. Doherty et al.   PLANT CELL

CBL-mediated targeting of CIPKs facilitates the decoding of calcium signals emanating from distinct cellular stores

(2009) Oliver Batistič et al.   PLANT JOURNAL

Characterization of a Midwinter-Expressed Dehydrin (DHN) Gene from Apple Trees (Malus domestica)

(2009) Monica L. Garcia-Bañuelos et al.   PLANT MOLECULAR BIOLOGY REPORTER

Comparative expression and transcript initiation of three peach dehydrin genes

(2009) Carole Leavel Bassett et al.   PLANTA

VitisNet: “Omics” Integration through Grapevine Molecular Networks

(2009) Jérôme Grimplet et al.   PLoS One

Transcript profiling in Vitis riparia during chilling requirement fulfillment reveals coordination of gene expression patterns with optimized bud break

(2008) Kathy Mathiason et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)

(2008) Ray Ming et al.   NATURE

Expressed sequence tag analysis of the response of apple (Malus x domestica ‘Royal Gala’) to low temperature and water deficit

(2008) Michael Wisniewski et al.   PHYSIOLOGIA PLANTARUM

Genome-Wide Analysis of MIKCC-Type MADS Box Genes in Grapevine

(2008) J. Diaz-Riquelme et al.   PLANT PHYSIOLOGY

Overall Alteration of Circadian Clock Gene Expression in the Chestnut Cold Response

(2008) Cristian Ibañez et al.   PLoS One

Sequencing and annotation of the evergrowing locus in peach [Prunus persica (L.) Batsch] reveals a cluster of six MADS-box transcription factors as candidate genes for regulation of terminal bud formation

(2008) Douglas Gary Bielenberg et al.   Tree Genetics & Genomes

Quantitative proteomic analysis of short photoperiod and low-temperature responses in bark tissues of peach (Prunus persica L. Batsch)

(2008) Jenny Renaut et al.   Tree Genetics & Genomes