The evolution of phenylpropanoid metabolism in the green lineage

AtABCG29 Is a Monolignol Transporter Involved in Lignin Biosynthesis

(2012) Santiago Alejandro et al.   CURRENT BIOLOGY

Novel applications of plant polyketide synthases

(2012) Ikuro Abe   CURRENT OPINION IN CHEMICAL BIOLOGY

Making new molecules – evolution of pathways for novel metabolites in plants

(2012) Daniel J Kliebenstein et al.   CURRENT OPINION IN PLANT BIOLOGY

Influence of repeated short-term nitrogen limitations on leaf phenolics metabolism in tomato

(2012) Romain Larbat et al.   PHYTOCHEMISTRY

CHITINASE-LIKE1/POM-POM1 and Its Homolog CTL2 Are Glucan-Interacting Proteins Important for Cellulose Biosynthesis in Arabidopsis

(2012) C. Sanchez-Rodriguez et al.   PLANT CELL

JUNGBRUNNEN1, a Reactive Oxygen Species-Responsive NAC Transcription Factor, Regulates Longevity in Arabidopsis

(2012) A. Wu et al.   PLANT CELL

Flavonols: old compounds for old roles

(2011) Susanna Pollastri et al.   ANNALS OF BOTANY

Origin of land plants: Do conjugating green algae hold the key?

(2011) Sabina Wodniok et al.   BMC EVOLUTIONARY BIOLOGY

Gene Duplication in Mimulus Underlies Parallel Floral Evolution via Independent trans-Regulatory Changes

(2011) Arielle M. Cooley et al.   CURRENT BIOLOGY

Potential pharmacological applications of polyphenolic derivatives from marine brown algae

(2011) Noel Vinay Thomas et al.   ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY

Molecular regulation of catechins biosynthesis in tea [Camellia sinensis (L.) O. Kuntze]

(2011) Arti Rani et al.   GENE

Comparative analysis of the UDP-glycosyltransferase multigene family in insects

(2011) Seung-Joon Ahn et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function

(2011) Takayuki Tohge et al.   Nature Protocols

Spores before sporophytes: hypothesizing the origin of sporogenesis at the algal-plant transition

(2011) Roy C. Brown et al.   NEW PHYTOLOGIST

PpASCL, a moss ortholog of anther-specific chalcone synthase-like enzymes, is a hydroxyalkylpyrone synthase involved in an evolutionarily conserved sporopollenin biosynthesis pathway

(2011) Che C. Colpitts et al.   NEW PHYTOLOGIST

Silencing of 4-coumarate:coenzyme A ligase in switchgrass leads to reduced lignin content and improved fermentable sugar yields for biofuel production

(2011) Bin Xu et al.   NEW PHYTOLOGIST

Three 2-oxoglutarate-dependent dioxygenase activities of Equisetum arvense L. forming flavone and flavonol from (2S)-naringenin

(2011) Miriam Bredebach et al.   PHYTOCHEMISTRY

How Can Research on Plants Contribute to Promoting Human Health?

(2011) Cathie Martin et al.   PLANT CELL

PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species

(2011) M. Mutwil et al.   PLANT CELL

Removing allosteric feedback inhibition of tomato 4-coumarate:CoA ligase by directed evolution

(2011) Moti Alberstein et al.   PLANT JOURNAL

An evolutionary view of functional diversity in family 1 glycosyltransferases

(2011) Keiko Yonekura-Sakakibara et al.   PLANT JOURNAL

Two glycosyltransferases involved in anthocyanin modification delineated by transcriptome independent component analysis in Arabidopsis thaliana

(2011) Keiko Yonekura-Sakakibara et al.   PLANT JOURNAL

Decoding algal genomes: tracing back the history of photosynthetic life on Earth

(2011) Leïla Tirichine et al.   PLANT JOURNAL

A genome-wide phylogenetic reconstruction of family 1 UDP-glycosyltransferases revealed the expansion of the family during the adaptation of plants to life on land

(2011) Lorenzo Caputi et al.   PLANT JOURNAL

Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to UV-B light

(2011) Miyako Kusano et al.   PLANT JOURNAL

A 2-oxoglutarate-dependent dioxygenase from Ruta graveolens L. exhibits p-coumaroyl CoA 2′-hydroxylase activity (C2′H): a missing step in the synthesis of umbelliferone in plants

(2011) Guilhem Vialart et al.   PLANT JOURNAL

Functional Characterization of Evolutionarily Divergent 4-Coumarate:Coenzyme A Ligases in Rice

(2011) J. Gui et al.   PLANT PHYSIOLOGY

Dissecting Plant Genomes with the PLAZA Comparative Genomics Platform

(2011) M. Van Bel et al.   PLANT PHYSIOLOGY

Toward the Storage Metabolome: Profiling the Barley Vacuole

(2011) T. Tohge et al.   PLANT PHYSIOLOGY

Formation of plant metabolic gene clusters within dynamic chromosomal regions

(2011) B. Field et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Isoarnottinin 4′-glucoside, a glycosylated coumarin from Prangos uloptera, with biological activity

(2011) Seyed Mehdi Razavi et al.   RUSSIAN JOURNAL OF BIOORGANIC CHEMISTRY

Transcriptional networks for lignin biosynthesis: more complex than we thought?

(2011) Qiao Zhao et al.   TRENDS IN PLANT SCIENCE

CoP: a database for characterizing co-expressed gene modules with biological information in plants

(2010) Y. Ogata et al.   BIOINFORMATICS

Identification of genes differentially expressed during interaction of resistant and susceptible apple cultivars (Malus × domestica) with Erwinia amylovora

(2010) Angela Baldo et al.   BMC PLANT BIOLOGY

Towards Improved Assessment of Functional Similarity in Large-Scale Screens: A Study on Indel Length

(2010) Alexander Schönhuth et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

The differential spatial distribution of secondary metabolites in Arabidopsis leaves reacting hypersensitively to Pseudomonas syringae pv. tomato is dependent on the oxidative burst

(2010) Clara Simon et al.   JOURNAL OF EXPERIMENTAL BOTANY

Increasing sucrose concentrations promote phenylpropanoid biosynthesis in grapevine cell cultures

(2010) Maura Ferri et al.   JOURNAL OF PLANT PHYSIOLOGY

Roles of flavonoids and the transcriptional regulator TtsI in the activation of the type III secretion system of Bradyrhizobium elkanii SEMIA587

(2010) S. Bolzan de Campos et al.   MICROBIOLOGY-SGM

Structure and function of the chalcone synthase superfamily of plant type III polyketide synthases

(2010) Ikuro Abe et al.   NATURAL PRODUCT REPORTS

Multiple functional roles of flavonoids in photoprotection

(2010) Giovanni Agati et al.   NEW PHYTOLOGIST

The origin and evolution of lignin biosynthesis

(2010) Jing-Ke Weng et al.   NEW PHYTOLOGIST

Polyphenols: Chemistry, Dietary Sources, Metabolism, and Nutritional Significance

(2010) Laura Bravo   NUTRITION REVIEWS

Synergetic effects of nitrogen depletion, temperature, and light on the content of phenolic compounds and gene expression in leaves of tomato

(2010) Trond Løvdal et al.   PHYTOCHEMISTRY

Convergent Evolution of Syringyl Lignin Biosynthesis via Distinct Pathways in the LycophyteSelaginellaand Flowering Plants

(2010) Jing-Ke Weng et al.   PLANT CELL

Crystal Structures of aPopulus tomentosa4-Coumarate:CoA Ligase Shed Light on Its Enzymatic Mechanisms

(2010) Yonglin Hu et al.   PLANT CELL

Identification of the 2-Hydroxyglutarate and Isovaleryl-CoA Dehydrogenases as Alternative Electron Donors Linking Lysine Catabolism to the Electron Transport Chain of Arabidopsis Mitochondria

(2010) W. L. Araujo et al.   PLANT CELL

A Novel Glucosylation Reaction on Anthocyanins Catalyzed by Acyl-Glucose–Dependent Glucosyltransferase in the Petals of Carnation and Delphinium

(2010) Yuki Matsuba et al.   PLANT CELL

Molecular cloning and function assay of a chalcone isomerase gene (GbCHI) from Ginkgo biloba

(2010) Hua Cheng et al.   PLANT CELL REPORTS

Berries: Improving Human Health and Healthy Aging, and Promoting Quality Life—A Review

(2010) Octavio Paredes-López et al.   PLANT FOODS FOR HUMAN NUTRITION

CYP99A3: functional identification of a diterpene oxidase from the momilactone biosynthetic gene cluster in rice

(2010) Qiang Wang et al.   PLANT JOURNAL

Evolutionary and comparative analysis of MYB and bHLH plant transcription factors

(2010) Antje Feller et al.   PLANT JOURNAL

Isolation of WDR and bHLH genes related to flavonoid synthesis in grapevine (Vitis vinifera L.)

(2010) J. T. Matus et al.   PLANT MOLECULAR BIOLOGY

A Complex Interplay of Three R2R3 MYB Transcription Factors Determines the Profile of Aliphatic Glucosinolates in Arabidopsis

(2010) I. E. Sonderby et al.   PLANT PHYSIOLOGY

R2R3-NaMYB8 Regulates the Accumulation of Phenylpropanoid-Polyamine Conjugates, Which Are Essential for Local and Systemic Defense against Insect Herbivores in Nicotiana attenuata

(2010) H. Kaur et al.   PLANT PHYSIOLOGY

Lignin Biosynthesis and Structure

(2010) R. Vanholme et al.   PLANT PHYSIOLOGY

Isolation and functional characterization of a floral tissue-specific R2R3 MYB regulator from tobacco

(2010) Sitakanta Pattanaik et al.   PLANTA

Anthocyanin biosynthesis in pears is regulated by a R2R3-MYB transcription factor PyMYB10

(2010) Shouqian Feng et al.   PLANTA

Cloning and Functional Characterization of a Chalcone Isomerase fromTrigonella foenum-graecumL.

(2010) Jian-chun Qin et al.   PLANTA MEDICA

Mutational analysis of phenylalanine ammonia lyase to improve reactions rates for various substrates

(2010) Sebastian Bartsch et al.   PROTEIN ENGINEERING DESIGN & SELECTION

MYB transcription factors in Arabidopsis

(2010) Christian Dubos et al.   TRENDS IN PLANT SCIENCE

The Biological Responses to Resveratrol and Other Polyphenols From Alcoholic Beverages

(2009) Lindsay Brown et al.   ALCOHOLISM-CLINICAL AND EXPERIMENTAL RESEARCH

Arabidopsis gene co-expression network and its functional modules

(2009) Linyong Mao et al.   BMC BIOINFORMATICS

Regularized gene selection in cancer microarray meta-analysis

(2009) Shuangge Ma et al.   BMC BIOINFORMATICS

Apoptosis by dietary agents for prevention and treatment of prostate cancer

(2009) Naghma Khan et al.   ENDOCRINE-RELATED CANCER

Arabidopsis thalianaexpresses a second functional flavonol synthase

(2009) Anja Preuß et al.   FEBS LETTERS

Changes of Isoflavone Profile in the Hypocotyls and Cotyledons of Soybeans during Dry Heating and Germination

(2009) Jian-Ping Yuan et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

TheC-Glycosylation of Flavonoids in Cereals

(2009) Melissa Brazier-Hicks et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Analysis of flavonoids and characterization of theOsFNS gene involved in flavone biosynthesis in Rice

(2009) Jeong Ho Kim et al.   JOURNAL OF PLANT BIOLOGY

Transcriptional Wiring of Cell Wall-Related Genes in Arabidopsis

(2009) Marek Mutwil et al.   Molecular Plant

CPC, a Single-Repeat R3 MYB, Is a Negative Regulator of Anthocyanin Biosynthesis in Arabidopsis

(2009) Hui-Fen Zhu et al.   Molecular Plant

Phenylpropanoid Biosynthesis

(2009) Thomas Vogt   Molecular Plant

Sinapoyltransferases in the light of molecular evolution

(2009) Felix Stehle et al.   PHYTOCHEMISTRY

Phenylpropanoid polyamine conjugate biosynthesis in Arabidopsis thaliana flower buds

(2009) Christin Fellenberg et al.   PHYTOCHEMISTRY

Metabolomics-oriented isolation and structure elucidation of 37 compounds including two anthocyanins from Arabidopsis thaliana

(2009) Ryo Nakabayashi et al.   PHYTOCHEMISTRY

A Novel Polyamine Acyltransferase Responsible for the Accumulation of Spermidine Conjugates in Arabidopsis Seed

(2009) J. Luo et al.   PLANT CELL

CYP76M7 Is an ent-Cassadiene C11 -Hydroxylase Defining a Second Multifunctional Diterpenoid Biosynthetic Gene Cluster in Rice

(2009) S. Swaminathan et al.   PLANT CELL

PLAZA: A Comparative Genomics Resource to Study Gene and Genome Evolution in Plants

(2009) S. Proost et al.   PLANT CELL

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

(2009) BJ��RN USADEL et al.   PLANT CELL AND ENVIRONMENT

Mutations in the cinnamate 4-hydroxylase gene impact metabolism, growth and development in Arabidopsis

(2009) Anthony L. Schilmiller et al.   PLANT JOURNAL

Genome-wide analysis of the chalcone synthase superfamily genes of Physcomitrella patens

(2009) P. K. Harshavardhan Koduri et al.   PLANT MOLECULAR BIOLOGY

Biochemical and Molecular Analysis of Pink Tomatoes: Deregulated Expression of the Gene Encoding Transcription Factor SlMYB12 Leads to Pink Tomato Fruit Color

(2009) A.-R. Ballester et al.   PLANT PHYSIOLOGY

The Grapevine R2R3-MYB Transcription Factor VvMYBF1 Regulates Flavonol Synthesis in Developing Grape Berries

(2009) S. Czemmel et al.   PLANT PHYSIOLOGY

The endogenous GL3, but not EGL3, gene is necessary for anthocyanin accumulation as induced by nitrogen depletion in Arabidopsis rosette stage leaves

(2009) Dugassa N. Feyissa et al.   PLANTA

Evolution of a Novel Phenolic Pathway for Pollen Development

(2009) M. Matsuno et al.   SCIENCE

Engineering and kinetic characterisation of two glucosyltransferases from Arabidopsis thaliana

(2008) Markus Weis et al.   BIOCHIMIE

Structure Function Analysis of Novel Type III Polyketide Synthases from Arabidopsis thaliana

(2008) Yuusuke Mizuuchi et al.   BIOLOGICAL & PHARMACEUTICAL BULLETIN

The Flavonoids of Tomatoes

(2008) Rune Slimestad et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Effects of Nitrogen Fertilization on the Phenolic Composition and Antioxidant Properties of Basil (Ocimum basilicumL.)

(2008) Phuong M. Nguyen et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Tomato Phenylalanine Ammonia-Lyase Gene Family, Highly Redundant but Strongly Underutilized

(2008) Ancheol Chang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Cloning, characterization and localization of CHS gene from blood orange, Citrus sinensis (L.) Osbeck cv. Ruby

(2008) Xu Lu et al.   MOLECULAR BIOLOGY REPORTS

Enrichment of tomato fruit with health-promoting anthocyanins by expression of select transcription factors

(2008) Eugenio Butelli et al.   NATURE BIOTECHNOLOGY

GeneCAT—novel webtools that combine BLAST and co-expression analyses

(2008) Marek Mutwil et al.   NUCLEIC ACIDS RESEARCH

ATTED-II provides coexpressed gene networks for Arabidopsis

(2008) T. Obayashi et al.   NUCLEIC ACIDS RESEARCH

Activities of Arabidopsis sinapoylglucose:malate sinapoyltransferase shed light on functional diversification of serine carboxypeptidase-like acyltransferases

(2008) Felix Stehle et al.   PHYTOCHEMISTRY

Identification of a 4-coumarate:CoA ligase gene family in the moss, Physcomitrella patens

(2008) Martina V. Silber et al.   PHYTOCHEMISTRY

The Modified Flavonol Glycosylation Profile in the Arabidopsis rol1 Mutants Results in Alterations in Plant Growth and Cell Shape Formation

(2008) C. Ringli et al.   PLANT CELL

Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene-Metabolite Correlations in Arabidopsis

(2008) K. Yonekura-Sakakibara et al.   PLANT CELL

Adjustment of growth and central metabolism to a mild but sustained nitrogen-limitation inArabidopsis

(2008) HENDRIK TSCHOEP et al.   PLANT CELL AND ENVIRONMENT

Scopoletin is biosynthesized viaortho-hydroxylation of feruloyl CoA by a 2-oxoglutarate-dependent dioxygenase inArabidopsis thaliana

(2008) Kosuke Kai et al.   PLANT JOURNAL

Metabolite annotations based on the integration of mass spectral information

(2008) Yoko Iijima et al.   PLANT JOURNAL

Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings

(2008) Antonio Gonzalez et al.   PLANT JOURNAL

AtMYBL2, a protein with a single MYB domain, acts as a negative regulator of anthocyanin biosynthesis in Arabidopsis

(2008) Kyoko Matsui et al.   PLANT JOURNAL

Flavones and flavonols play distinct critical roles during nodulation ofMedicago truncatulabySinorhizobium meliloti

(2008) Juan Zhang et al.   PLANT JOURNAL

MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites

(2008) Fumio Matsuda et al.   PLANT JOURNAL

Ectopic expression of VlmybA1 in grapevine activates a narrow set of genes involved in anthocyanin synthesis and transport

(2008) Maria-Cruz Cutanda-Perez et al.   PLANT MOLECULAR BIOLOGY

Suppression of 4-Coumarate-CoA Ligase in the Coniferous Gymnosperm Pinus radiata

(2008) A. Wagner et al.   PLANT PHYSIOLOGY

Metabolome Analysis of Biosynthetic Mutants Reveals a Diversity of Metabolic Changes and Allows Identification of a Large Number of New Compounds in Arabidopsis

(2008) C. Bottcher et al.   PLANT PHYSIOLOGY

CressExpress: A Tool For Large-Scale Mining of Expression Data from Arabidopsis

(2008) V. Srinivasasainagendra et al.   PLANT PHYSIOLOGY

The Transcription Factor VvMYB5b Contributes to the Regulation of Anthocyanin and Proanthocyanidin Biosynthesis in Developing Grape Berries

(2008) L. Deluc et al.   PLANT PHYSIOLOGY

Reconfiguration of the Achene and Receptacle Metabolic Networks during Strawberry Fruit Development

(2008) A. Fait et al.   PLANT PHYSIOLOGY

The role of UDP-glucose:hydroxycinnamate glucosyltransferases in phenylpropanoid metabolism and the response to UV-B radiation in Arabidopsis thaliana

(2008) Dirk Meißner et al.   PLANTA

Metabolomic and genetic analyses of flavonol synthesis in Arabidopsis thaliana support the in vivo involvement of leucoanthocyanidin dioxygenase

(2008) Ralf Stracke et al.   PLANTA

A Visual Data Mining Tool that Facilitates Reconstruction of Transcription Regulatory Networks

(2008) Daniel C. Jupiter et al.   PLoS One

Metabolic Diversification--Independent Assembly of Operon-Like Gene Clusters in Different Plants

(2008) B. Field et al.   SCIENCE

Plants to power: bioenergy to fuel the future

(2008) Joshua S. Yuan et al.   TRENDS IN PLANT SCIENCE

MYB transcription factors that colour our fruit

(2008) Andrew C. Allan et al.   TRENDS IN PLANT SCIENCE

Flavan-3-ols: Nature, occurrence and biological activity

(2007) Patricia M. Aron et al.   MOLECULAR NUTRITION & FOOD RESEARCH

Decoding genes with coexpression networks and metabolomics – ‘majority report by precogs’

(2007) Kazuki Saito et al.   TRENDS IN PLANT SCIENCE