Evidence supporting a critical contribution of intrinsically disordered regions to the biochemical behavior of full-length human HP1γ

PhosphoSVM: prediction of phosphorylation sites by integrating various protein sequence attributes with a support vector machine

(2014) Yongchao Dou et al.   AMINO ACIDS

Characterization of the effects of phosphorylation by CK2 on the structure and binding properties of human HP1β

(2014) Francesca Munari et al.   FEBS LETTERS

Evidence supporting the existence of a NUPR1-like family of helix-loop-helix chromatin proteins related to, yet distinct from, AT hook-containing HMG proteins

(2014) Raul Urrutia et al.   JOURNAL OF MOLECULAR MODELING

GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs

(2014) Qi Zhao et al.   NUCLEIC ACIDS RESEARCH

LAceP: Lysine Acetylation Site Prediction Using Logistic Regression Classifiers

(2014) Ting Hou et al.   PLoS One

A conformational switch in HP1 releases auto-inhibition to drive heterochromatin assembly

(2013) Daniele Canzio et al.   NATURE

Structural Plasticity in Human Heterochromatin Protein 1β

(2013) Francesca Munari et al.   PLoS One

On the Importance of Polar Interactions for Complexes Containing Intrinsically Disordered Proteins

(2013) Eric T. C. Wong et al.   PLoS Computational Biology

Structural Role of RKS Motifs in Chromatin Interactions: A Molecular Dynamics Study of HP1 Bound to a Variably Modified Histone Tail

(2012) George V. Papamokos et al.   BIOPHYSICAL JOURNAL

Methylation of Lysine 9 in Histone H3 Directs Alternative Modes of Highly Dynamic Interaction of Heterochromatin Protein hHP1β with the Nucleosome

(2012) Francesca Munari et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Sequence-specific Recruitment of Heterochromatin Protein 1 via Interaction with Krüppel-like Factor 11, a Human Transcription Factor Involved in Tumor Suppression and Metabolic Diseases

(2012) Gwen Lomberk et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Systematic analysis of human lysine acetylation proteins and accurate prediction of human lysine acetylation through bi-relative adapted binomial score Bayes feature representation

(2012) Jianlin Shao et al.   Molecular BioSystems

ASEB: a web server for KAT-specific acetylation site prediction

(2012) L. Wang et al.   NUCLEIC ACIDS RESEARCH

Chromodomain-Mediated Oligomerization of HP1 Suggests a Nucleosome-Bridging Mechanism for Heterochromatin Assembly

(2011) Daniele Canzio et al.   MOLECULAR CELL

PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse

(2011) P. V. Hornbeck et al.   NUCLEIC ACIDS RESEARCH

Prediction of Ubiquitination Sites by Using the Composition of k-Spaced Amino Acid Pairs

(2011) Zhen Chen et al.   PLoS One

PONDR-FIT: A meta-predictor of intrinsically disordered amino acids

(2010) Bin Xue et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Musite, a Tool for Global Prediction of General and Kinase-specific Phosphorylation Sites

(2010) Jianjiong Gao et al.   MOLECULAR & CELLULAR PROTEOMICS

PHOSIDA 2011: the posttranslational modification database

(2010) F. Gnad et al.   NUCLEIC ACIDS RESEARCH

3V: cavity, channel and cleft volume calculator and extractor

(2010) N. R. Voss et al.   NUCLEIC ACIDS RESEARCH

PreDisorder: ab initio sequence-based prediction of protein disordered regions

(2009) Xin Deng et al.   BMC BIOINFORMATICS

Incorporating structural characteristics for identification of protein methylation sites

(2009) Dray-Ming Shien et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

PROSITE, a protein domain database for functional characterization and annotation

(2009) Christian J. A. Sigrist et al.   NUCLEIC ACIDS RESEARCH

Computational Identification of Protein Methylation Sites through Bi-Profile Bayes Feature Extraction

(2009) Jianlin Shao et al.   PLoS One

Improved Prediction of Lysine Acetylation by Support Vector Machines

(2009) Songling Li et al.   PROTEIN AND PEPTIDE LETTERS

Identification, analysis, and prediction of protein ubiquitination sites

(2009) Predrag Radivojac et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

From Nonspecific DNA–Protein Encounter Complexes to the Prediction of DNA–Protein Interactions

(2009) Mu Gao et al.   PLoS Computational Biology

Intrinsic disorder prediction from the analysis of multiple protein fold recognition models

(2008) Liam J. McGuffin   BIOINFORMATICS

OnD-CRF: predicting order and disorder in proteins conditional random fields

(2008) L. Wang et al.   BIOINFORMATICS

Prediction of disordered regions in proteins based on the meta approach

(2008) T. Ishida et al.   BIOINFORMATICS

Six Classes of Nuclear Localization Signals Specific to Different Binding Grooves of Importin α

(2008) Shunichi Kosugi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Linking Heterochromatin Protein 1 (HP1) to cancer progression

(2008) George K. Dialynas et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

A fast and accurate computational approach to protein ionization

(2008) Velin Z. Spassov et al.   PROTEIN SCIENCE

MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information

(2008) Sitao Wu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS