PhosphoSVM: prediction of phosphorylation sites by integrating various protein sequence attributes with a support vector machine

Prediction of MHC class I binding peptides with a new feature encoding technique

(2012) Murat Gök et al.   CELLULAR IMMUNOLOGY

PhosPhAt goes kinases—searchable protein kinase target information in the plant phosphorylation site database PhosPhAt

(2012) Monika Zulawski et al.   NUCLEIC ACIDS RESEARCH

L1pred: A Sequence-Based Prediction Tool for Catalytic Residues in Enzymes with the L1-logreg Classifier

(2012) Yongchao Dou et al.   PLoS One

Computational prediction of eukaryotic phosphorylation sites

(2011) B. Trost et al.   BIOINFORMATICS

Prediction of catalytic residues based on an overlapping amino acid classification

(2010) Yongchao Dou et al.   AMINO ACIDS

A comparative study of conservation and variation scores

(2010) Fredrik Johansson et al.   BMC BIOINFORMATICS

AMS 3.0: Prediction of Post-Translational Modifications

(2010) Subhadip Basu et al.   BMC BIOINFORMATICS

Machine learning approach to predict protein phosphorylation sites by incorporating evolutionary information

(2010) Ashis Biswas et al.   BMC BIOINFORMATICS

A Summary of Computational Resources for Protein Phosphorylation

(2010) Yu Xue et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Musite, a Tool for Global Prediction of General and Kinase-specific Phosphorylation Sites

(2010) Jianjiong Gao et al.   MOLECULAR & CELLULAR PROTEOMICS

GPS 2.1: enhanced prediction of kinase-specific phosphorylation sites with an algorithm of motif length selection

(2010) Y. Xue et al.   PROTEIN ENGINEERING DESIGN & SELECTION

PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update

(2009) Pawel Durek et al.   NUCLEIC ACIDS RESEARCH

Computational Identification of Protein Methylation Sites through Bi-Profile Bayes Feature Extraction

(2009) Jianlin Shao et al.   PLoS One

Improved Prediction of Lysine Acetylation by Support Vector Machines

(2009) Songling Li et al.   PROTEIN AND PEPTIDE LETTERS

Accurate sequence-based prediction of catalytic residues

(2008) Tuo Zhang et al.   BIOINFORMATICS

StAR: a simple tool for the statistical comparison of ROC curves

(2008) Ismael A Vergara et al.   BMC BIOINFORMATICS

Prediction of glycosylation sites using random forests

(2008) Stephen E Hamby et al.   BMC BIOINFORMATICS

A versatile strategy to define the phosphorylation preferences of plant protein kinases and screen for putative substrates

(2008) Florina Vlad et al.   PLANT JOURNAL