Fluorescence spectroscopy and molecular dynamics simulations in studies on the mechanism of membrane destabilization by antimicrobial peptides

Describing the Mechanism of Antimicrobial Peptide Action with the Interfacial Activity Model

(2010) William C. Wimley   ACS Chemical Biology

Molecular Simulations of Lipid Flip-Flop in the Presence of Model Transmembrane Helices

(2010) Nicolas Sapay et al.   BIOCHEMISTRY

Quantitative assessment of peptide–lipid interactions.

(2010) Pedro M. Matos et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Lipid diffusion in planar membranes investigated by fluorescence correlation spectroscopy

(2010) Radek Macháň et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

All-or-None versus Graded: Single-Vesicle Analysis Reveals Lipid Composition Effects on Membrane Permeabilization

(2010) Beatriz Apellániz et al.   BIOPHYSICAL JOURNAL

Pores Formed by Baxα5 Relax to a Smaller Size and Keep at Equilibrium

(2010) Gustavo Fuertes et al.   BIOPHYSICAL JOURNAL

Cell-Penetrating HIV1 TAT Peptides Can Generate Pores in Model Membranes

(2010) Corina Ciobanasu et al.   BIOPHYSICAL JOURNAL

Fluctuations and the Rate-Limiting Step of Peptide-Induced Membrane Leakage

(2010) C. Mazzuca et al.   BIOPHYSICAL JOURNAL

Reversible Liposome Association Induced by LAH4: A Peptide with Potent Antimicrobial and Nucleic Acid Transfection Activities

(2010) Arnaud Marquette et al.   BIOPHYSICAL JOURNAL

Interpretation of 2H-NMR Experiments on the Orientation of the Transmembrane Helix WALP23 by Computer Simulations

(2010) Luca Monticelli et al.   BIOPHYSICAL JOURNAL

Defect-Mediated Trafficking across Cell Membranes: Insights fromin SilicoModeling

(2010) Andrey A. Gurtovenko et al.   CHEMICAL REVIEWS

Coarse-grained molecular dynamics of tetrameric transmembrane peptide bundles within a lipid bilayer

(2010) Thuy Hien T. Nguyen et al.   CHEMISTRY AND PHYSICS OF LIPIDS

Fluorescence anisotropy and resonance energy transfer: powerful tools for measuring real time protein dynamics in a physiological environment

(2010) Christopher M Yengo et al.   CURRENT OPINION IN PHARMACOLOGY

Membrane/Toxin Interaction Energetics via Serial Multiscale Molecular Dynamics Simulations

(2010) Chze Ling Wee et al.   Journal of Chemical Theory and Computation

CD Spectroscopy of Peptides and Proteins Bound to Large Unilamellar Vesicles

(2010) Alexey S. Ladokhin et al.   JOURNAL OF MEMBRANE BIOLOGY

On the Antibacterial Action of Cyclic Peptides: Insights from Coarse-Grained MD Simulations

(2010) Adil Khalfa et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Kinetic Pathway of Antimicrobial Peptide Magainin 2-Induced Pore Formation in Lipid Membranes

(2010) Yukihiro Tamba et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Antimicrobial Peptides Induce Growth of Phosphatidylglycerol Domains in a Model Bacterial Membrane

(2010) Anton A. Polyansky et al.   Journal of Physical Chemistry Letters

Mechanism and Kinetics of Peptide Partitioning into Membranes from All-Atom Simulations of Thermostable Peptides

(2010) Martin B. Ulmschneider et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Characterization of Peptide-Induced Morphological Alterations in Membranes by Fluorescence Resonance Energy Transfer

(2010) Luis Loura et al.   PROTEIN AND PEPTIDE LETTERS

Recent Applications of Fluorescence Recovery after Photobleaching (FRAP) to Membrane Bio-Macromolecules

(2010) Gamal Rayan et al.   SENSORS

A single-vesicle content mixing assay for SNARE-mediated membrane fusion

(2010) Jiajie Diao et al.   Nature Communications

Molecular Dynamics Simulations of the Dimerization of Transmembrane α-Helices

(2009) Emi Psachoulia et al.   ACCOUNTS OF CHEMICAL RESEARCH

Membrane perturbation by the antimicrobial peptide PMAP-23: A fluorescence and molecular dynamics study

(2009) Barbara Orioni et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Alternative Mechanisms for the Interaction of the Cell-Penetrating Peptides Penetratin and the TAT Peptide with Lipid Bilayers

(2009) Semen Yesylevskyy et al.   BIOPHYSICAL JOURNAL

Peptide Nanopores and Lipid Bilayers: Interactions by Coarse-Grained Molecular-Dynamics Simulations

(2009) Jochen W. Klingelhoefer et al.   BIOPHYSICAL JOURNAL

CHARMM-GUI Membrane Builder for Mixed Bilayers and Its Application to Yeast Membranes

(2009) Sunhwan Jo et al.   BIOPHYSICAL JOURNAL

Self assembly of peptides near or within membranes using coarse grained MD simulations

(2009) A. Khalfa et al.   CHEMICAL PHYSICS

Coarse-grained modeling of lipids

(2009) Sandra V. Bennun et al.   CHEMISTRY AND PHYSICS OF LIPIDS

Rationalizing the membrane interactions of cationic amphipathic antimicrobial peptides by their molecular shape

(2009) Burkhard Bechinger   CURRENT OPINION IN COLLOID & INTERFACE SCIENCE

Quantification of protein–lipid selectivity using FRET

(2009) Luís M. S. Loura et al.   EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS

Membrane microheterogeneity: Förster resonance energy transfer characterization of lateral membrane domains

(2009) Luís M. S. Loura et al.   EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS

Membrane poration by antimicrobial peptides combining atomistic and coarse-grained descriptions

(2009) Andrzej J. Rzepiela et al.   FARADAY DISCUSSIONS

Multifunctional host defense peptides: Antimicrobial peptides, the small yet big players in innate and adaptive immunity

(2009) Constance Auvynet et al.   FEBS Journal

Different mechanisms of action of antimicrobial peptides: insights from fluorescence spectroscopy experiments and molecular dynamics simulations

(2009) Gianfranco Bocchinfuso et al.   JOURNAL OF PEPTIDE SCIENCE

Interactions of Phospholipid Bilayers with Several Classes of Amphiphilic α-Helical Peptides: Insights from Coarse-Grained Molecular Dynamics Simulations

(2009) Paraskevi Gkeka et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Antimicrobial peptides: linking partition, activity and high membrane-bound concentrations

(2009) Manuel N. Melo et al.   NATURE REVIEWS MICROBIOLOGY

Coarse-grained simulation: a high-throughput computational approach to membrane proteins

(2008) Mark S.P. Sansom et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Coarse-Grained Molecular Dynamics Simulations of the Energetics of Helix Insertion into a Lipid Bilayer†

(2008) Peter J. Bond et al.   BIOCHEMISTRY

Toroidal pores formed by antimicrobial peptides show significant disorder

(2008) Durba Sengupta et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

FRET analysis of domain formation and properties in complex membrane systems

(2008) Luís M.S. Loura et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Lipids on the move: Simulations of membrane pores, domains, stalks and curves

(2008) Siewert J. Marrink et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Coarse-Grained Simulations of the Membrane-Active Antimicrobial Peptide Maculatin 1.1

(2008) Peter J. Bond et al.   BIOPHYSICAL JOURNAL

Structure of the Alamethicin Pore Reconstructed by X-Ray Diffraction Analysis

(2008) Shuo Qian et al.   BIOPHYSICAL JOURNAL

Self-Assembly of a Simple Membrane Protein: Coarse-Grained Molecular Dynamics Simulations of the Influenza M2 Channel

(2008) Timothy Carpenter et al.   BIOPHYSICAL JOURNAL

Peptide Aggregation and Pore Formation in a Lipid Bilayer: A Combined Coarse-Grained and All Atom Molecular Dynamics Study

(2008) Lea Thøgersen et al.   BIOPHYSICAL JOURNAL

Analysis of in vitro activities and modes of action of synthetic antimicrobial peptides derived from an α-helical ‘sequence template’

(2008) U. Pag et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

The MARTINI Coarse-Grained Force Field: Extension to Proteins

(2008) Luca Monticelli et al.   Journal of Chemical Theory and Computation

Thermodynamics of Peptide Insertion and Aggregation in a Lipid Bilayer

(2008) Arneh Babakhani et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Coarse-Grained MD Simulations of Membrane Protein-Bilayer Self-Assembly

(2008) Kathryn A. Scott et al.   STRUCTURE