Quantitative trait locus mapping of deep rooting by linkage and association analysis in rice

Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism

(2014) Wei Chen et al.   NATURE GENETICS

Genetic Differentiation Revealed by Selective Loci of Drought-Responding EST-SSRs between Upland and Lowland Rice in China

(2014) Hui Xia et al.   PLoS One

A High-Density SNP Genotyping Array for Rice Biology and Molecular Breeding

(2013) Haodong Chen et al.   Molecular Plant

Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions

(2013) Yusaku Uga et al.   NATURE GENETICS

Pitfalls of predicting complex traits from SNPs

(2013) Naomi R. Wray et al.   NATURE REVIEWS GENETICS

Resequencing rice genomes: an emerging new era of rice genomics

(2013) Xuehui Huang et al.   TRENDS IN GENETICS

Analysis of elite variety tag SNPs reveals an important allele in upland rice

(2013) Jun Lyu et al.   Nature Communications

A major QTL controlling deep rooting on rice chromosome 4

(2013) Yusaku Uga et al.   Scientific Reports

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

Root attributes affecting water uptake of rice (Oryza sativa) under drought

(2012) Amelia Henry et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide genetic changes during modern breeding of maize

(2012) Yinping Jiao et al.   NATURE GENETICS

Root biology and genetic improvement for drought avoidance in rice

(2011) Veeresh R.P. Gowda et al.   FIELD CROPS RESEARCH

Genome wide association analyses for drought tolerance related traits in barley (Hordeum vulgare L.)

(2011) R.K. Varshney et al.   FIELD CROPS RESEARCH

Dro1, a major QTL involved in deep rooting of rice under upland field conditions

(2011) Yusaku Uga et al.   JOURNAL OF EXPERIMENTAL BOTANY

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

(2011) Xun Xu et al.   NATURE BIOTECHNOLOGY

Identification of qSOR1, a major rice QTL involved in soil-surface rooting in paddy fields

(2011) Yusaku Uga et al.   THEORETICAL AND APPLIED GENETICS

Genetic Architecture of Aluminum Tolerance in Rice (Oryza sativa) Determined through Genome-Wide Association Analysis and QTL Mapping

(2011) Adam N. Famoso et al.   PLoS Genetics

Genome-wide association studies in plants: the missing heritability is in the field

(2011) Benjamin Brachi et al.   GENOME BIOLOGY

Breeding for water-saving and drought-resistance rice (WDR) in China

(2010) L. J. Luo   JOURNAL OF EXPERIMENTAL BOTANY

Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils

(2010) Thomas L Turner et al.   NATURE GENETICS

Mixed linear model approach adapted for genome-wide association studies

(2010) Zhiwu Zhang et al.   NATURE GENETICS

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping

(2010) A. Nemri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A core collection and mini core collection of Oryza sativa L. in China

(2010) Hongliang Zhang et al.   THEORETICAL AND APPLIED GENETICS

Linkage and Association Mapping of Arabidopsis thaliana Flowering Time in Nature

(2010) Benjamin Brachi et al.   PLoS Genetics

Complex-trait analysis in plants

(2010) Thomas Mitchell-Olds   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Variation in root morphology and anatomy among accessions of cultivated rice (Oryza sativa L.) with different genetic backgrounds

(2009) Yusaku Uga et al.   BREEDING SCIENCE

Advances in Drought Resistance of Rice

(2009) Muhammad Farooq et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Rice Root Genetic Architecture: Meta-analysis from a Drought QTL Database

(2009) Brigitte Courtois et al.   Rice

QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations

(2008) J. Yang et al.   BIOINFORMATICS

QTL analysis of panicle neck diameter, a trait highly correlated with panicle size, under well-watered and drought conditions in rice (Oryza sativa L.)

(2007) G.L. Liu et al.   PLANT SCIENCE