Combining multidimensional genomic measurements for predicting cancer prognosis: observations from TCGA

Integrative analysis of miRNA and mRNA expression profiles in pheochromocytoma and paraganglioma identifies genotype-specific markers and potentially regulated pathways

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Identification of prognostic gene signatures of glioblastoma: a study based on TCGA data analysis

(2013) Y.-W. Kim et al.   NEURO-ONCOLOGY

Genomic and Epigenomic Landscapes of Adult De Novo Acute Myeloid Leukemia

(2013)   NEW ENGLAND JOURNAL OF MEDICINE

Integrated analysis of microRNA and mRNA expression: adding biological significance to microRNA target predictions

(2013) Maarten van Iterson et al.   NUCLEIC ACIDS RESEARCH

iBAG: integrative Bayesian analysis of high-dimensional multiplatform genomics data

(2012) Wenting Wang et al.   BIOINFORMATICS

Identifying multi-layer gene regulatory modules from multi-dimensional genomic data

(2012) W. Li et al.   BIOINFORMATICS

Matching of array CGH and gene expression microarray features for the purpose of integrative genomic analyses

(2012) Wessel N van Wieringen et al.   BMC BIOINFORMATICS

Synergistic effect of different levels of genomic data for cancer clinical outcome prediction

(2012) Dokyoon Kim et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Comprehensive molecular portraits of human breast tumours

(2012) Daniel C. Koboldt et al.   NATURE

Comprehensive genomic characterization of squamous cell lung cancers

(2012)   NATURE

A Predictive Framework for Integrating Disparate Genomic Data Types Using Sample-Specific Gene Set Enrichment Analysis and Multi-Task Learning

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A Hypermethylated Phenotype Is a Better Predictor of Survival than MGMT Methylation in Anaplastic Oligodendroglial Brain Tumors: A Report from EORTC Study 26951

(2011) M. J. van den Bent et al.   CLINICAL CANCER RESEARCH

Cancer genomics: from discovery science to personalized medicine

(2011) Lynda Chin et al.   NATURE MEDICINE

Integrated Analyses of Copy Number Variations and Gene Expression in Lung Adenocarcinoma

(2011) Tzu-Pin Lu et al.   PLoS One

On the C-statistics for evaluating overall adequacy of risk prediction procedures with censored survival data

(2011) Hajime Uno et al.   STATISTICS IN MEDICINE

Integrative analysis of gene expression and copy number alterations using canonical correlation analysis

(2010) Charlotte Soneson et al.   BMC BIOINFORMATICS

Integrative analysis of DNA copy number and gene expression in metastatic oral squamous cell carcinoma identifies genes associated with poor survival

(2010) Chang Xu et al.   Molecular Cancer

Multi-Platform Whole-Genome Microarray Analyses Refine the Epigenetic Signature of Breast Cancer Metastasis with Gene Expression and Copy Number

(2010) Joseph Andrews et al.   PLoS One

Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis

(2009) Ronglai Shen et al.   BIOINFORMATICS

Integrated analysis of DNA copy number and gene expression microarray data using gene sets

(2009) Renée X Menezes et al.   BMC BIOINFORMATICS

ROC analysis with multiple classes and multiple tests: methodology and its application in microarray studies

(2008) J. Li et al.   BIOSTATISTICS

Penalized feature selection and classification in bioinformatics

(2008) S. Ma et al.   BRIEFINGS IN BIOINFORMATICS

Molecular Classification of Acute Myeloid Leukemia: Are We There Yet?

(2008) Jerald P. Radich   JOURNAL OF CLINICAL ONCOLOGY

Comprehensive genomic characterization defines human glioblastoma genes and core pathways

(2008) Roger McLendon et al.   NATURE