Exploring transcription factors reveals crucial members and regulatory networks involved in different abiotic stresses in Brassica napus L.

Identification of the WRKY gene family and functional analysis of two genes in Caragana intermedia

(2018) Yongqing Wan et al.   BMC PLANT BIOLOGY

Controllability Analysis of A Gene Network for Arabidopsis thaliana Reveals Characteristics of Functional Gene Families

(2018) Pei Wang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Multi-gene co-expression can improve comprehensive resistance to multiple abiotic stresses in Brassica napus L.

(2018) Zaiqing Wang et al.   PLANT SCIENCE

Spectral Learning Algorithm Reveals Propagation Capability of Complex Networks

(2018) Shuang Xu et al.   IEEE Transactions on Cybernetics

Genome-wide identification, functional prediction, and evolutionary analysis of the R2R3-MYB superfamily in Brassica napus

(2017) Ali Hajiebrahimi et al.   GENOME

Divergent Evolutionary Patterns of NAC Transcription Factors Are Associated with Diversification and Gene Duplications in Angiosperm

(2017) Xiaoli Jin et al.   Frontiers in Plant Science

Genome-Wide Identification and Structural Analysis of bZIP Transcription Factor Genes in Brassica napus

(2017) Yan Zhou et al.   Genes

Transcriptomic basis for drought-resistance in Brassica napus L.

(2017) Pei Wang et al.   Scientific Reports

Identification, cloning and characterization of R2R3-MYB gene family in canola (Brassica napusL.) identify a novel member modulating ROS accumulation and hypersensitive-like cell death

(2016) Bisi Chen et al.   DNA RESEARCH

The global interdependence among oil-equity nexuses

(2016) Shupei Huang et al.   ENERGY

Dynamic transcriptome analysis reveals AP2/ERF transcription factors responsible for cold stress in rapeseed (Brassica napus L.)

(2016) Chunfang Du et al.   MOLECULAR GENETICS AND GENOMICS

The genome sequence of allopolyploid Brassica juncea and analysis of differential homoeolog gene expression influencing selection

(2016) Jinghua Yang et al.   NATURE GENETICS

PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants

(2016) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Functional characterization of NAC55 transcription factor from oilseed rape (Brassica napus L.) as a novel transcriptional activator modulating reactive oxygen species accumulation and cell death

(2016) Fangfang Niu et al.   PLANT MOLECULAR BIOLOGY

A transcription factor hierarchy defines an environmental stress response network

(2016) L. Song et al.   SCIENCE

BnaABF2, a bZIP transcription factor from rapeseed (Brassica napus L.), enhances drought and salt tolerance in transgenic Arabidopsis

(2016) Bi-Yan Zhao et al.   Botanical Studies

Genome-Wide Identification and Expression Analysis of WRKY Transcription Factors under Multiple Stresses in Brassica napus

(2016) Yajun He et al.   PLoS One

Comparative transcriptomic analysis uncovers the complex genetic network for resistance to Sclerotinia sclerotiorum in Brassica napus

(2016) Jian Wu et al.   Scientific Reports

The evolution of WRKY transcription factors

(2015) Charles I Rinerson et al.   BMC PLANT BIOLOGY

Duplication and Divergence Effect on Network Motifs in Undirected Bio-Molecular Networks

(2015) Pei Wang et al.   IEEE Transactions on Biomedical Circuits and Systems

Comparative Analysis of the Brassica napus Root and Leaf Transcript Profiling in Response to Drought Stress

(2015) Chunqing Liu et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Transcriptome Profiling and Identification of Transcription Factors in Ramie (Boehmeria nivea L. Gaud) in Response to PEG Treatment, Using Illumina Paired-End Sequencing Technology

(2015) Xia An et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Ensembl Genomes 2016: more genomes, more complexity

(2015) Paul Julian Kersey et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Identification and characterization of plant-specific NAC gene family in canola (Brassica napus L.) reveal novel members involved in cell death

(2015) Boya Wang et al.   PLANT MOLECULAR BIOLOGY

Composition of the SAGA complex in plants and its role in controlling gene expression in response to abiotic stresses

(2015) Felipe Moraga et al.   Frontiers in Plant Science

Genome-wide identification of WRKY family genes and their response to cold stress in Vitis vinifera

(2014) Lina Wang et al.   BMC PLANT BIOLOGY

Transcriptome analysis of newly classified bZIP transcription factors of Brassica rapa in cold stress response

(2014) Indeok Hwang et al.   GENOMICS

Overexpression ofBnWRKY33in oilseed rape enhances resistance toSclerotinia sclerotiorum

(2014) Zheng Wang et al.   MOLECULAR PLANT PATHOLOGY

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

(2014) B. Chalhoub et al.   SCIENCE

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

(2014) Shengyi Liu et al.   Nature Communications

Analysis of Brassica napus ESTs: gene discovery and expression patterns of AP2/ERF-family transcription factors

(2013) Jing Zhuang et al.   MOLECULAR BIOLOGY REPORTS

Transcriptome analyses of primitively eusocial wasps reveal novel insights into the evolution of sociality and the origin of alternative phenotypes

(2013) Pedro G Ferreira et al.   GENOME BIOLOGY

MYB transcription factor genes as regulators for plant responses: an overview

(2013) Supriya Ambawat et al.   PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Two Brassica napus genes encoding NAC transcription factors are involved in response to high-salinity stress

(2012) Hui Zhong et al.   PLANT CELL REPORTS

NAC proteins: regulation and role in stress tolerance

(2012) Swati Puranik et al.   TRENDS IN PLANT SCIENCE

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

How plants cope with temperature stress

(2011) Virginia Walbot   BMC BIOLOGY

BRAD, the genetics and genomics database for Brassica plants

(2011) Feng Cheng et al.   BMC PLANT BIOLOGY

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

The genome of the mesopolyploid crop species Brassica rapa

(2011) Xiaowu Wang et al.   NATURE GENETICS

Global relative parameter sensitivities of the feed-forward loops in genetic networks

(2011) Pei Wang et al.   NEUROCOMPUTING

WRKY transcription factors

(2010) Paul J. Rushton et al.   TRENDS IN PLANT SCIENCE

MYB transcription factors in Arabidopsis

(2010) Christian Dubos et al.   TRENDS IN PLANT SCIENCE

Identification and expression analysis of WRKY transcription factor genes in canola (Brassica napus L.) in response to fungal pathogens and hormone treatments

(2009) Bo Yang et al.   BMC PLANT BIOLOGY

How to usefully compare homologous plant genes and chromosomes as DNA sequences

(2008) Eric Lyons et al.   PLANT JOURNAL

Principal Transcriptional Programs Regulating Plant Amino Acid Metabolism in Response to Abiotic Stresses

(2008) H. Less et al.   PLANT PHYSIOLOGY