A novel bioinformatics pipeline to discover genes related to arbuscular mycorrhizal symbiosis based on their evolutionary conservation pattern among higher plants

S-locus receptor kinase signalling

(2014) June B. Nasrallah et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Comparative Phylogenomics Uncovers the Impact of Symbiotic Associations on Host Genome Evolution

(2014) Pierre-Marc Delaux et al.   PLoS Genetics

Cell and Developmental Biology of Arbuscular Mycorrhiza Symbiosis

(2013) Caroline Gutjahr et al.   Annual Review of Cell and Developmental Biology

Evolutionarily conserved CLE peptide signaling in plant development, symbiosis, and parasitism

(2013) Kaori Miyawaki et al.   CURRENT OPINION IN PLANT BIOLOGY

Plant sphingolipids: function follows form

(2013) Jonathan E Markham et al.   CURRENT OPINION IN PLANT BIOLOGY

Hieranoid: Hierarchical Orthology Inference

(2013) Fabian Schreiber et al.   JOURNAL OF MOLECULAR BIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Speak, friend and enter: signalling systems that promote beneficial symbiotic associations in plants

(2013) Giles E. D. Oldroyd   NATURE REVIEWS MICROBIOLOGY

Activities at the Universal Protein Resource (UniProt)

(2013)   NUCLEIC ACIDS RESEARCH

Thecis-acting CTTC-P1BS module is indicative for gene function ofLjVTI12, a Qb-SNARE protein gene that is required for arbuscule formation inLotus japonicus

(2013) Frédéric Lota et al.   PLANT JOURNAL

Divergent DNA-Binding Specificities of a Group of ETHYLENE RESPONSE FACTOR Transcription Factors Involved in Plant Defense

(2013) T. Shoji et al.   PLANT PHYSIOLOGY

The Arabidopsis ETHYLENE RESPONSE FACTOR1 Regulates Abiotic Stress-Responsive Gene Expression by Binding to Different cis-Acting Elements in Response to Different Stress Signals

(2013) M.-C. Cheng et al.   PLANT PHYSIOLOGY

Identification and validation of promoters and cis-acting regulatory elements

(2013) Carlos M. Hernandez-Garcia et al.   PLANT SCIENCE

AaERF1 Positively Regulates the Resistance to Botrytis cinerea in Artemisia annua

(2013) Xu Lu et al.   PLoS One

The Independent Acquisition of Plant Root Nitrogen-Fixing Symbiosis in Fabids Recruited the Same Genetic Pathway for Nodule Organogenesis

(2013) Sergio Svistoonoff et al.   PLoS One

Evolution of the plant–microbe symbiotic ‘toolkit’

(2013) Pierre-Marc Delaux et al.   TRENDS IN PLANT SCIENCE

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

(2012) John H Morris et al.   BMC BIOINFORMATICS

Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene

(2012) Julien Pirrello et al.   BMC PLANT BIOLOGY

A GRAS-Type Transcription Factor with a Specific Function in Mycorrhizal Signaling

(2012) Enrico Gobbato et al.   CURRENT BIOLOGY

Activation of calcium- and calmodulin-dependent protein kinase (CCaMK), the central regulator of plant root endosymbiosis

(2012) Sylvia Singh et al.   CURRENT OPINION IN PLANT BIOLOGY

Redox-mediated Mechanisms Regulate DNA Binding Activity of the G-group of Basic Region Leucine Zipper (bZIP) Transcription Factors inArabidopsis

(2012) Jehad Shaikhali et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Arabidopsis AP2/ERF Transcription Factor RAP2.11 Modulates Plant Response to Low-Potassium Conditions

(2012) Min Jung Kim et al.   Molecular Plant

Identification of rhizome-specific genes by genome-wide differential expression Analysis in Oryza longistaminata

(2011) Fengyi Hu et al.   BMC PLANT BIOLOGY

Transcriptional regulation of defence genes and involvement of the WRKY transcription factor in arbuscular mycorrhizal potato root colonization

(2011) Adrien Gallou et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Medicago truncatula IPD3Is a Member of the Common Symbiotic Signaling Pathway Required for Rhizobial and Mycorrhizal Symbioses

(2011) Beatrix Horváth et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species

(2011) Paul J. Kersey et al.   NUCLEIC ACIDS RESEARCH

Establishment of a Lotus japonicus gene tagging population using the exon-targeting endogenous retrotransposon LORE1

(2011) Eigo Fukai et al.   PLANT JOURNAL

Transcriptomics of Actinorhizal Symbioses Reveals Homologs of the Whole Common Symbiotic Signaling Cascade

(2011) V. Hocher et al.   PLANT PHYSIOLOGY

Hemicelluloses

(2010) Henrik Vibe Scheller et al.   Annual Review of Plant Biology

The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell

(2010) T. Junier et al.   BIOINFORMATICS

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Identification of two conserved cis-acting elements, MYCS and P1BS, involved in the regulation of mycorrhiza-activated phosphate transporters in eudicot species

(2010) Aiqun Chen et al.   NEW PHYTOLOGIST

Presence of three mycorrhizal genes in the common ancestor of land plants suggests a key role of mycorrhizas in the colonization of land by plants

(2010) Bin Wang et al.   NEW PHYTOLOGIST

NENA, a Lotus japonicus Homolog of Sec13, Is Required for Rhizodermal Infection by Arbuscular Mycorrhiza Fungi and Rhizobia but Dispensable for Cortical Endosymbiotic Development

(2010) M. Groth et al.   PLANT CELL

Two Medicago truncatula Half-ABC Transporters Are Essential for Arbuscule Development in Arbuscular Mycorrhizal Symbiosis

(2010) Q. Zhang et al.   PLANT CELL

Several cis-elements including a palindrome involved in pollen-specific activity of SBgLR promoter

(2010) Peng Zhou et al.   PLANT CELL REPORTS

Vapyrin, a gene essential for intracellular progression of arbuscular mycorrhizal symbiosis, is also essential for infection by rhizobia in the nodule symbiosis of Medicago truncatula

(2010) Jeremy D. Murray et al.   PLANT JOURNAL

The PAM1 gene of petunia, required for intracellular accommodation and morphogenesis of arbuscular mycorrhizal fungi, encodes a homologue of VAPYRIN

(2010) Nadja Feddermann et al.   PLANT JOURNAL

Phosphate systemically inhibits development of arbuscular mycorrhiza in Petunia hybrida and represses genes involved in mycorrhizal functioning

(2010) Florence Breuillin et al.   PLANT JOURNAL

Regulation of the Nitrogen Transfer Pathway in the Arbuscular Mycorrhizal Symbiosis: Gene Characterization and the Coordination of Expression with Nitrogen Flux

(2010) C. Tian et al.   PLANT PHYSIOLOGY

The Medicago truncatula gene expression atlas web server

(2009) Ji He et al.   BMC BIOINFORMATICS

Global and cell-type gene expression profiles in tomato plants colonized by an arbuscular mycorrhizal fungus

(2009) Valentina Fiorilli et al.   NEW PHYTOLOGIST

Genome-wide reprogramming of regulatory networks, transport, cell wall and membrane biogenesis during arbuscular mycorrhizal symbiosis in Lotus japonicus

(2009) Mike Guether et al.   NEW PHYTOLOGIST

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Medicago truncatulaVapyrin is a novel protein required for arbuscular mycorrhizal symbiosis

(2009) Nathan Pumplin et al.   PLANT JOURNAL

A Mycorrhizal-Specific Ammonium Transporter from Lotus japonicus Acquires Nitrogen Released by Arbuscular Mycorrhizal Fungi

(2009) M. Guether et al.   PLANT PHYSIOLOGY

60Ma of legume nodulation. What's new? What's changing?

(2008) J. I. Sprent   JOURNAL OF EXPERIMENTAL BOTANY

OsIPD3, an ortholog of theMedicago truncatulaDMI3 interacting protein IPD3, is required for mycorrhizal symbiosis in rice

(2008) Caiyan Chen et al.   NEW PHYTOLOGIST

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH

A transgenic dTph1 insertional mutagenesis system for forward genetics in mycorrhizal phosphate transport of Petunia

(2008) Sarah Wegmüller et al.   PLANT JOURNAL

Generation of a 3D indexed Petunia insertion database for reverse genetics

(2008) Michiel Vandenbussche et al.   PLANT JOURNAL

A gene expression atlas of the model legumeMedicago truncatula

(2008) Vagner A. Benedito et al.   PLANT JOURNAL

CYCLOPS, a mediator of symbiotic intracellular accommodation

(2008) K. Yano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA