Expression-based network biology identifies immune-related functional modules involved in plant defense

SWEET17, a Facilitative Transporter, Mediates Fructose Transport across the Tonoplast of Arabidopsis Roots and Leaves

(2014) W.-J. Guo et al.   PLANT PHYSIOLOGY

DNA-binding specificities of plant transcription factors and their potential to define target genes

(2014) José M. Franco-Zorrilla et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Role ofArabidopsisHeterotrimeric G-Protein Subunits in MLO2 Function and MAMP-Triggered Immunity

(2013) Justine Lorek et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Analyses of wrky18 wrky40 Plants Reveal Critical Roles of SA/EDS1 Signaling and Indole-Glucosinolate Biosynthesis for Golovinomyces orontii Resistance and a Loss-of Resistance Towards Pseudomonas syringae pv. tomato AvrRPS4

(2013) Moritz Schön et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Defense-related transcription factors WRKY70 and WRKY54 modulate osmotic stress tolerance by regulating stomatal aperture inArabidopsis

(2013) Jing Li et al.   NEW PHYTOLOGIST

Phosphorylation of an ERF Transcription Factor by Arabidopsis MPK3/MPK6 Regulates Plant Defense Gene Induction and Fungal Resistance

(2013) X. Meng et al.   PLANT CELL

Defects in IRE1 enhance cell death and fail to degrade mRNAs encoding secretory pathway proteins in the Arabidopsis unfolded protein response

(2013) K.-i. Mishiba et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Engineering NLR immune receptors for broad-spectrum disease resistance

(2013) M. Shahid Mukhtar   TRENDS IN PLANT SCIENCE

Tell me more: roles of NPRs in plant immunity

(2013) Karolina M. Pajerowska-Mukhtar et al.   TRENDS IN PLANT SCIENCE

DAVID-WS: a stateful web service to facilitate gene/protein list analysis

(2012) X. Jiao et al.   BIOINFORMATICS

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

(2012) John H Morris et al.   BMC BIOINFORMATICS

Comparison of co-expression measures: mutual information, correlation, and model based indices

(2012) Lin Song et al.   BMC BIOINFORMATICS

WRKY54 and WRKY70 co-operate as negative regulators of leaf senescence in Arabidopsis thaliana

(2012) Sébastien Besseau et al.   JOURNAL OF EXPERIMENTAL BOTANY

NRT/PTR transporters are essential for translocation of glucosinolate defence compounds to seeds

(2012) Hussam Hassan Nour-Eldin et al.   NATURE

Conserved Noncoding Sequences Highlight Shared Components of Regulatory Networks in Dicotyledonous Plants

(2012) Laura Baxter et al.   PLANT CELL

Systematic Identification of Functional Plant Modules through the Integration of Complementary Data Sources

(2012) K. S. Heyndrickx et al.   PLANT PHYSIOLOGY

Sugar transporters in plants and in their interactions with fungi

(2012) Joan Doidy et al.   TRENDS IN PLANT SCIENCE

parmigene—a parallel R package for mutual information estimation and gene network reconstruction

(2011) Gabriele Sales et al.   BIOINFORMATICS

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

(2011) P. Gaudet et al.   BRIEFINGS IN BIOINFORMATICS

SnapShot: Protein-Protein Interaction Networks

(2011) Jan Seebacher et al.   CELL

Interactome Networks and Human Disease

(2011) Marc Vidal et al.   CELL

Improving immunity in crops: new tactics in an old game

(2011) Brande BH Wulff et al.   CURRENT OPINION IN PLANT BIOLOGY

Intronic T-DNA Insertion Renders Arabidopsis opr3 a Conditional Jasmonic Acid-Producing Mutant

(2011) E. W. Chehab et al.   PLANT PHYSIOLOGY

Independently Evolved Virulence Effectors Converge onto Hubs in a Plant Immune System Network

(2011) M. S. Mukhtar et al.   SCIENCE

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach

(2010) Pietro Zoppoli et al.   BMC BIOINFORMATICS

The Arabidopsis Floral Homeotic Proteins APETALA3 and PISTILLATA Negatively Regulate the BANQUO Genes Implicated in Light Signaling

(2010) C. D. Mara et al.   PLANT CELL

Ethylene Signaling Regulates Accumulation of the FLS2 Receptor and Is Required for the Oxidative Burst Contributing to Plant Immunity

(2010) Sophia Mersmann et al.   PLANT PHYSIOLOGY

Arabidopsis gene co-expression network and its functional modules

(2009) Linyong Mao et al.   BMC BIOINFORMATICS

NPR1 in Plant Defense: It's Not over 'til It's Turned over

(2009) M. Shahid Mukhtar et al.   CELL

ETHYLENE INSENSITIVE3 and ETHYLENE INSENSITIVE3-LIKE1 Repress SALICYLIC ACID INDUCTION DEFICIENT2 Expression to Negatively Regulate Plant Innate Immunity in Arabidopsis

(2009) H. Chen et al.   PLANT CELL

Tryptophan-Derived Metabolites Are Required for Antifungal Defense in the Arabidopsis mlo2 Mutant

(2009) C. Consonni et al.   PLANT PHYSIOLOGY

Laser microdissection of Arabidopsis cells at the powdery mildew infection site reveals site-specific processes and regulators

(2009) D. Chandran et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions

(2009) Javier Carrera et al.   GENOME BIOLOGY

Making Sense of Hormone Crosstalk during Plant Immune Responses

(2008) Steven H. Spoel et al.   Cell Host & Microbe