Identification of chilling stress-responsive tomato microRNAs and their target genes by high-throughput sequencing and degradome analysis

Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis

(2014) Jianxia Jiang et al.   BMC GENOMICS

Genomic analyses provide insights into the history of tomato breeding

(2014) Tao Lin et al.   NATURE GENETICS

Genome-wide identification of soybean microRNAs and their targets reveals their organ-specificity and responses to phosphate starvation

(2013) Feng Xu et al.   BMC GENOMICS

Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis

(2013) Peng Shuai et al.   BMC GENOMICS

Identification of microRNAs in Caragana intermedia by high-throughput sequencing and expression analysis of 12 microRNAs and their targets under salt stress

(2013) Jianfeng Zhu et al.   PLANT CELL REPORTS

An S-Domain Receptor-Like Kinase, OsSIK2, Confers Abiotic Stress Tolerance and Delays Dark-Induced Leaf Senescence in Rice

(2013) L.-J. Chen et al.   PLANT PHYSIOLOGY

Identification of miRNAs and their targets from Brassica napus by high-throughput sequencing and degradome analysis

(2012) Miao Y Xu et al.   BMC GENOMICS

Genome wide identification of chilling responsive microRNAs in Prunus persica

(2012) Abdelali Barakat et al.   BMC GENOMICS

Identification of wild soybean miRNAs and their target genes responsive to aluminum stress

(2012) Qiao-Ying Zeng et al.   BMC PLANT BIOLOGY

Protein expression changes during cotton fiber elongation in response to low temperature stress

(2012) Mi Zheng et al.   JOURNAL OF PLANT PHYSIOLOGY

Expression profile of miRNAs in Populus cathayana L. and Salix matsudana Koidz under salt stress

(2012) Jing Zhou et al.   MOLECULAR BIOLOGY REPORTS

Characterization of grapevine microR164 and its target genes

(2012) Xin Sun et al.   MOLECULAR BIOLOGY REPORTS

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Genome-wide identification and analysis of microRNA responding to long-term waterlogging in crown roots of maize seedlings

(2012) Lihong Zhai et al.   PHYSIOLOGIA PLANTARUM

A Combined Approach of High-Throughput Sequencing and Degradome Analysis Reveals Tissue Specific Expression of MicroRNAs and Their Targets in Cucumber

(2012) Weihua Mao et al.   PLoS One

Differential Modulation of Photosynthesis, Signaling, and Transcriptional Regulation between Tolerant and Sensitive Tomato Genotypes under Cold Stress

(2012) Hui Liu et al.   PLoS One

Genome-wide identification of cold-responsive and new microRNAs in Populus tomentosa by high-throughput sequencing

(2011) Lei Chen et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica

(2011) Bosheng Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Computational identification of microRNAs in peach expressed sequence tags and validation of their precise sequences by miR-RACE

(2011) Yanping Zhang et al.   MOLECULAR BIOLOGY REPORTS

Deep sequencing of grapevine flower and berry short RNA library for discovery of novel microRNAs and validation of precise sequences of grapevine microRNAs deposited in miRBase

(2011) Chen Wang et al.   PHYSIOLOGIA PLANTARUM

Genome-wide identification of Medicago truncatula microRNAs and their targets reveals their differential regulation by heavy metal

(2011) ZHAO SHENG ZHOU et al.   PLANT CELL AND ENVIRONMENT

Male gametophyte-specific WRKY34 transcription factor mediates cold sensitivity of mature pollen in Arabidopsis

(2010) Changsong Zou et al.   JOURNAL OF EXPERIMENTAL BOTANY

Arabidopsis lyrataSmall RNAs: TransientMIRNAand Small Interfering RNA Loci within theArabidopsisGenus

(2010) Zhaorong Ma et al.   PLANT CELL

miRNA expression patterns of Triticum dicoccoides in response to shock drought stress

(2010) Melda Kantar et al.   PLANTA

MicroRNAome of Porcine Pre- and Postnatal Development

(2010) Mingzhou Li et al.   PLoS One

Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response

(2009) Jingyu Zhang et al.   BMC GENOMICS

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

(2008) C. Addo-Quaye et al.   BIOINFORMATICS

Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome

(2008) Charles Addo-Quaye et al.   CURRENT BIOLOGY

MicroRNA maturation and action—the expanding roles of ARGONAUTEs

(2008) Allison C Mallory et al.   CURRENT OPINION IN PLANT BIOLOGY

Big impacts by small RNAs in plant development

(2008) George Chuck et al.   CURRENT OPINION IN PLANT BIOLOGY

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

(2008) R. D. Morin et al.   GENOME RESEARCH

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

(2008) S. Moxon et al.   GENOME RESEARCH

Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends

(2008) Marcelo A German et al.   NATURE BIOTECHNOLOGY

OligoHeatMap (OHM): an online tool to estimate and display hybridizations of oligonucleotides onto DNA sequences

(2008) O. Croce et al.   NUCLEIC ACIDS RESEARCH

Criteria for Annotation of Plant MicroRNAs

(2008) B. C. Meyers et al.   PLANT CELL

Small RNAs in tomato fruit and leaf development

(2007) A ITAYA et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms