Genome-wide identification of soybean microRNAs and their targets reveals their organ-specificity and responses to phosphate starvation

Genome organization and characteristics of soybean microRNAs

(2012) Marie Turner et al.   BMC GENOMICS

Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing

(2012) Md Shamimuzzaman et al.   BMC GENOMICS

Functional disruption of the pentatricopeptide protein SLG1 affects mitochondrial RNA editing, plant development, and responses to abiotic stresses in Arabidopsis

(2012) Hui Yuan et al.   PLANT JOURNAL

The High-Affinity Phosphate Transporter GmPT5 Regulates Phosphate Transport to Nodules and Nodulation in Soybean

(2012) L. Qin et al.   PLANT PHYSIOLOGY

PlantMiRNAPred: efficient classification of real and pseudo plant pre-miRNAs

(2011) Ping Xuan et al.   BIOINFORMATICS

Identification of novel soybean microRNAs involved in abiotic and biotic stresses

(2011) Franceli R Kulcheski et al.   BMC GENOMICS

Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing

(2011) Qing-Xin Song et al.   BMC PLANT BIOLOGY

MicroRNAs in the shoot apical meristem of soybean

(2011) Chui E. Wong et al.   JOURNAL OF EXPERIMENTAL BOTANY

Involvement of miR169 in the nitrogen-starvation responses in Arabidopsis

(2011) Meng Zhao et al.   NEW PHYTOLOGIST

Massive Analysis of Rice Small RNAs: Mechanistic Implications of Regulated MicroRNAs and Variants for Differential Target RNA Cleavage

(2011) D.-H. Jeong et al.   PLANT CELL

A soybean β-expansin gene GmEXPB2 intrinsically involved in root system architecture responses to abiotic stresses

(2011) Wenbing Guo et al.   PLANT JOURNAL

Phosphate Deprivation in Maize: Genetics and Genomics

(2011) C. Calderon-Vazquez et al.   PLANT PHYSIOLOGY

Stars and Symbiosis: MicroRNA- and MicroRNA*-Mediated Transcript Cleavage Involved in Arbuscular Mycorrhizal Symbiosis

(2011) E. A. Devers et al.   PLANT PHYSIOLOGY

The use of microRNAs as reference genes for quantitative polymerase chain reaction in soybean

(2010) Franceli Rodrigues Kulcheski et al.   ANALYTICAL BIOCHEMISTRY

Prediction of novel miRNAs and associated target genes in Glycine max

(2010) Trupti Joshi et al.   BMC BIOINFORMATICS

Phloem small RNAs, nutrient stress responses, and systemic mobility

(2010) Anja Buhtz et al.   BMC PLANT BIOLOGY

Analysis of phosphorus-deficient responsive miRNAs and cis-elements from soybean (Glycine max L.)

(2010) Hou Qing Zeng et al.   JOURNAL OF PLANT PHYSIOLOGY

Expression Pattern Suggests a Role of MiR399 in the Regulation of the Cellular Response to Local Pi Increase During Arbuscular Mycorrhizal Symbiosis

(2010) Anja Branscheid et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

MicroRNA expression profile in common bean (Phaseolus vulgaris) under nutrient deficiency stresses and manganese toxicity

(2010) Oswaldo Valdés-López et al.   NEW PHYTOLOGIST

Complex Regulation of Two Target Genes Encoding SPX-MFS Proteins by Rice miR827 in Response to Phosphate Starvation

(2010) S.-I. Lin et al.   PLANT AND CELL PHYSIOLOGY

Transcriptome-wide identification of microRNA targets in rice

(2010) Yong-Fang Li et al.   PLANT JOURNAL

Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana

(2010) E. A. Vidal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Insights into the mechanism of plant development: Interactions of miRNAs pathway with phytohormone response

(2009) Qing Liu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Over-expression of miR172 causes loss of spikelet determinacy and floral organ abnormalities in rice (Oryza sativa)

(2009) Qian-Hao Zhu et al.   BMC PLANT BIOLOGY

miR156-Regulated SPL Transcription Factors Define an Endogenous Flowering Pathway in Arabidopsis thaliana

(2009) Jia-Wei Wang et al.   CELL

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

Molecular and functional characterization of the plastid-localized Phosphoenolpyruvate enolase (ENO1) fromArabidopsis thaliana

(2009) Veena Prabhakar et al.   FEBS LETTERS

Phenotypic Plasticity of Adventitious Rooting in Arabidopsis Is Controlled by Complex Regulation of AUXIN RESPONSE FACTOR Transcripts and MicroRNA Abundance

(2009) L. Gutierrez et al.   PLANT CELL

Genome-Wide Medicago truncatula Small RNA Analysis Revealed Novel MicroRNAs and Isoforms Differentially Regulated in Roots and Nodules

(2009) C. Lelandais-Briere et al.   PLANT CELL

A microRNA-transcription factor module regulates lateral organ size and patterning in Arabidopsis

(2009) Clayton T. Larue et al.   PLANT JOURNAL

Identification of Nutrient-Responsive Arabidopsis and Rapeseed MicroRNAs by Comprehensive Real-Time Polymerase Chain Reaction Profiling and Small RNA Sequencing

(2009) B. D. Pant et al.   PLANT PHYSIOLOGY

Uncovering Small RNA-Mediated Responses to Phosphate Deficiency in Arabidopsis by Deep Sequencing

(2009) L.-C. Hsieh et al.   PLANT PHYSIOLOGY

miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula

(2009) Inês Trindade et al.   PLANTA

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets

(2008) C. Addo-Quaye et al.   BIOINFORMATICS

Novel and nodulation-regulated microRNAs in soybean roots

(2008) Senthil Subramanian et al.   BMC GENOMICS

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome

(2008) Charles Addo-Quaye et al.   CURRENT BIOLOGY

OsBIRH1, a DEAD-box RNA helicase with functions in modulating defence responses against pathogen infection and oxidative stress

(2008) D. Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis

(2008) Bikram Datt Pant et al.   PLANT JOURNAL

Identification and characterization of small RNAs from the phloem of Brassica napus

(2008) Anja Buhtz et al.   PLANT JOURNAL

Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types

(2008) Cintia Goulart Kawashima et al.   PLANT JOURNAL

The microRNA regulated SBP-box genes SPL9 and SPL15 control shoot maturation in Arabidopsis

(2008) Stefan Schwarz et al.   PLANT MOLECULAR BIOLOGY

Identification of soybean microRNAs and their targets

(2008) Baohong Zhang et al.   PLANTA