Deep Sequencing Identifies Viral and Wasp Genes with Potential Roles in Replication of Microplitis demolitor Bracovirus

An Interdependent Metabolic Patchwork in the Nested Symbiosis of Mealybugs

(2011) John P. McCutcheon et al.   CURRENT BIOLOGY

Transcriptomic profiling of Microplitis demolitor bracovirus reveals host, tissue and stage-specific patterns of activity

(2011) K. Bitra et al.   JOURNAL OF GENERAL VIROLOGY

The Encapsidated Genome of Microplitis demolitor Bracovirus Integrates into the Host Pseudoplusia includens

(2011) M. H. Beck et al.   JOURNAL OF VIROLOGY

Aphid genome expression reveals host-symbiont cooperation in the production of amino acids

(2011) A. K. Hansen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep sequencing of Cotesia vestalis bracovirus reveals the complexity of a polydnavirus genome

(2011) Ya-feng Chen et al.   VIROLOGY

Egf1.5 is a second phenoloxidase cascade inhibitor encoded by Microplitis demolitor bracovirus

(2010) Zhiqiang Lu et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Identification of bracovirus particle proteins and analysis of their transcript levels at the stage of virion formation

(2010) C. Wetterwald et al.   JOURNAL OF GENERAL VIROLOGY

Sequence Variability in Clinical and Laboratory Isolates of Herpes Simplex Virus 1 Reveals New Mutations

(2010) M. L. Szpara et al.   JOURNAL OF VIROLOGY

Beyond the Consensus: Dissecting Within-Host Viral Population Diversity of Foot-and-Mouth Disease Virus by Using Next-Generation Genome Sequencing

(2010) C. F. Wright et al.   JOURNAL OF VIROLOGY

Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species

(2010) J. H. Werren et al.   SCIENCE

Unique Signatures of Long Noncoding RNA Expression in Response to Virus Infection and Altered Innate Immune Signaling

(2010) X. Peng et al.   mBio

Infidelity of SARS-CoV Nsp14-Exonuclease Mutant Virus Replication Is Revealed by Complete Genome Sequencing

(2010) Lance D. Eckerle et al.   PLoS Pathogens

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Global transcriptional response of pig brain and lung to natural infection by Pseudorabies virus

(2009) JF Yuan et al.   BMC MICROBIOLOGY

Nudiviruses and other large, double-stranded circular DNA viruses of invertebrates: New insights on an old topic

(2009) Yongjie Wang et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

Polydnavirus hidden face: The genes producing virus particles of parasitic wasps

(2009) Annie Bézier et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Polydnaviruses of Braconid Wasps Derive from an Ancestral Nudivirus

(2009) A. Bezier et al.   SCIENCE

RNAi Targeting of West Nile Virus in Mosquito Midguts Promotes Virus Diversification

(2009) Doug E. Brackney et al.   PLoS Pathogens

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Phylogeny of the parasitic microgastroid subfamilies (Hymenoptera: Braconidae) based on sequence data from seven genes, with an improved time estimate of the origin of the lineage

(2008) Nicholas Murphy et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Comparative genomics of mutualistic viruses of Glyptapanteles parasitic wasps

(2008) Christopher A Desjardins et al.   GENOME BIOLOGY