Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria

PePPER: a webserver for prediction of prokaryote promoter elements and regulons

(2012) Anne de Jong et al.   BMC GENOMICS

A Fur-like protein PerR regulates two oxidative stress response related operons dpr and metQIN in Streptococcus suis

(2012) Tengfei Zhang et al.   BMC MICROBIOLOGY

Inactivation of ccpA and aeration affect growth, metabolite production and stress tolerance in Lactobacillus plantarum WCFS1

(2012) Teresa Zotta et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

The Redox-Sensing Regulator Rex Modulates Central Carbon Metabolism, Stress Tolerance Response and Biofilm Formation by Streptococcus mutans

(2012) Jacob P. Bitoun et al.   PLoS One

Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

(2011) Dmitry A Rodionov et al.   BMC GENOMICS

CRISPR-based adaptive immune systems

(2011) Michael P Terns et al.   CURRENT OPINION IN MICROBIOLOGY

The CRISPR/Cas Immune System Is an Operon Regulated by LeuO, H-NS, and Leucine-Responsive Regulatory Protein in Salmonella enterica Serovar Typhi

(2011) L. Medina-Aparicio et al.   JOURNAL OF BACTERIOLOGY

Inference of the Transcriptional Regulatory Network in Staphylococcus aureus by Integration of Experimental and Genomics-Based Evidence

(2011) D. A. Ravcheev et al.   JOURNAL OF BACTERIOLOGY

Transcriptional Regulation of Central Carbon and Energy Metabolism in Bacteria by Redox-Responsive Repressor Rex

(2011) D. A. Ravcheev et al.   JOURNAL OF BACTERIOLOGY

Peroxide Stimulon and Role of PerR in Group A Streptococcus

(2011) R. Grifantini et al.   JOURNAL OF BACTERIOLOGY

Regulon of the N-Acetylglucosamine Utilization Regulator NagR in Bacillus subtilis

(2011) R. Bertram et al.   JOURNAL OF BACTERIOLOGY

CelR-mediated activation of the cellobiose-utilization gene cluster in Streptococcus pneumoniae

(2011) S. Shafeeq et al.   MICROBIOLOGY-SGM

Lactic acid bacteria: life after genomics

(2011) Michiel Kleerebezem et al.   Microbial Biotechnology

Catabolite Control Protein A Controls Hydrogen Peroxide Production and Cell Death in Streptococcus sanguinis

(2010) L. Zheng et al.   JOURNAL OF BACTERIOLOGY

H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO

(2010) Edze R. Westra et al.   MOLECULAR MICROBIOLOGY

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

(2010) S. Gama-Castro et al.   NUCLEIC ACIDS RESEARCH

RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach

(2010) P. S. Novichkov et al.   NUCLEIC ACIDS RESEARCH

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

At the Crossroads of Bacterial Metabolism and Virulence Factor Synthesis in Staphylococci

(2009) G. A. Somerville et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes

(2009) Pavel S. Novichkov et al.   NUCLEIC ACIDS RESEARCH

MicrobesOnline: an integrated portal for comparative and functional genomics

(2009) P. S. Dehal et al.   NUCLEIC ACIDS RESEARCH

Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis

(2008) Anne Goelzer et al.   BMC Systems Biology

Lactobacillus phylogenomics - towards a reclassification of the genus

(2008) M. J. Claesson et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY