Sequencing the transcriptome of milk production: milk trumps mammary tissue

Milk yield responses to changes in milking frequency during early lactation are associated with coordinated and persistent changes in mammary gene expression

(2013) Emma H Wall et al.   BMC GENOMICS

RNA sequencing to study gene expression and single nucleotide polymorphism variation associated with citrate content in cow milk

(2013) A. Cánovas et al.   JOURNAL OF DAIRY SCIENCE

Early Diet Impacts Infant Rhesus Gut Microbiome, Immunity, and Metabolism

(2013) Aifric O’Sullivan et al.   JOURNAL OF PROTEOME RESEARCH

Identification of gene sets and pathways associated with lactation performance in mice

(2013) Jerry Wei et al.   PHYSIOLOGICAL GENOMICS

Transcriptome Profiling of microRNA by Next-Gen Deep Sequencing Reveals Known and Novel miRNA Species in the Lipid Fraction of Human Breast Milk

(2013) Erika M. Munch et al.   PLoS One

Direct interaction of Plin2 with lipids on the surface of lipid droplets: a live cell FRET analysis

(2012) Avery L. McIntosh et al.   AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY

Transcriptional profiling of bovine milk using RNA sequencing

(2012) Saumya Wickramasinghe et al.   BMC GENOMICS

Validation of RNA isolated from milk fat globules to profile mammary epithelial cell expression during lactation and transcriptional response to a bacterial infection

(2012) P. Brenaut et al.   JOURNAL OF DAIRY SCIENCE

Metabolomic Phenotyping Validates the Infant Rhesus Monkey as a Model of Human Infant Metabolism

(2012) Aifric OʼSullivan et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Old and New Stories: Revelations from Functional Analysis of the Bovine Mammary Transcriptome during the Lactation Cycle

(2012) Massimo Bionaz et al.   PLoS One

Increased promoter methylation in exfoliated breast epithelial cells in women with a previous breast biopsy

(2011) Eva P. Browne et al.   Epigenetics

The Adipophilin C Terminus Is a Self-folding Membrane-binding Domain That Is Important for Milk Lipid Secretion

(2011) Brandi M. Chong et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Technical note: A vacuum-assisted approach for biopsying the mammary glands of various species

(2011) M.K. VanKlompenberg et al.   JOURNAL OF DAIRY SCIENCE

Acute milk yield response to frequent milking during early lactation is mediated by genes transiently regulated by milk removal

(2011) E. H. Wall et al.   PHYSIOLOGICAL GENOMICS

Transcriptome Profiling of Bovine Milk Oligosaccharide Metabolism Genes Using RNA-Sequencing

(2011) Saumya Wickramasinghe et al.   PLoS One

Determinants of adipophilin function in milk lipid formation and secretion

(2011) Brandi M. Chong et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Mammary gene expression profiles during an intramammary challenge reveal potential mechanisms linking negative energy balance with impaired immune response

(2010) Kasey M. Moyes et al.   PHYSIOLOGICAL GENOMICS

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Richer milk for sons but more milk for daughters: Sex-biased investment during lactation varies with maternal life history in rhesus macaques

(2009) Katherine Hinde   AMERICAN JOURNAL OF HUMAN BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Differentiation of the Mammary Epithelial Cell during Involution: Implications for Breast Cancer

(2009) Jenifer Monks et al.   JOURNAL OF MAMMARY GLAND BIOLOGY AND NEOPLASIA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Transcriptome analysis identifies pathways associated with enhanced maternal performance in QSi5 mice

(2008) Palaniappan Ramanathan et al.   BMC GENOMICS

Onset of lactation in the bovine mammary gland: gene expression profiling indicates a strong inhibition of gene expression in cell proliferation

(2008) Kiera A. Finucane et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Gene expression in the human mammary epithelium during lactation: the milk fat globule transcriptome

(2008) Patricia D. Maningat et al.   PHYSIOLOGICAL GENOMICS