Transcriptome comparison and gene coexpression network analysis provide a systems view of citrus response to ‘Candidatus Liberibacter asiaticus’ infection

The Cullin-RING Ubiquitin-Protein Ligases

(2011) Zhihua Hua et al.   Annual Review of Plant Biology

Gene coexpression clusters and putative regulatory elements underlying seed storage reserve accumulation in Arabidopsis

(2011) Fred Y Peng et al.   BMC GENOMICS

WRKY Transcription Factors Involved in Activation of SA Biosynthesis Genes

(2011) Marcel C van Verk et al.   BMC PLANT BIOLOGY

Harpin-induced expression and transgenic overexpression of the phloem protein gene AtPP2-A1 in Arabidopsis repress phloem feeding of the green peach aphid Myzus persicae

(2011) Chunling Zhang et al.   BMC PLANT BIOLOGY

Comparative iTRAQ proteome and transcriptome analyses of sweet orange infected by “Candidatus Liberibacter asiaticus”

(2011) Jing Fan et al.   PHYSIOLOGIA PLANTARUM

Global Landscape of a Co-Expressed Gene Network in Barley and its Application to Gene Discovery in Triticeae Crops

(2011) Keiichi Mochida et al.   PLANT AND CELL PHYSIOLOGY

The Predicted Arabidopsis Interactome Resource and Network Topology-Based Systems Biology Analyses

(2011) M. Lin et al.   PLANT CELL

The Pepper E3 Ubiquitin Ligase RING1 Gene, CaRING1, Is Required for Cell Death and the Salicylic Acid-Dependent Defense Response

(2011) D. H. Lee et al.   PLANT PHYSIOLOGY

Comprehensive Network Analysis of Anther-Expressed Genes in Rice by the Combination of 33 Laser Microdissection and 143 Spatiotemporal Microarrays

(2011) Koichiro Aya et al.   PLoS One

Genome-wide network model capturing seed germination reveals coordinated regulation of plant cellular phase transitions

(2011) G. W. Bassel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Callose deposition in the phloem plasmodesmata and inhibition of phloem transport in citrus leaves infected with “Candidatus Liberibacter asiaticus”

(2011) Eun-Ji Koh et al.   PROTOPLASMA

Independently Evolved Virulence Effectors Converge onto Hubs in a Plant Immune System Network

(2011) M. S. Mukhtar et al.   SCIENCE

SAG101 Forms a Ternary Complex with EDS1 and PAD4 and Is Required for Resistance Signaling against Turnip Crinkle Virus

(2011) Shifeng Zhu et al.   PLoS Pathogens

Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate

(2011) Gabriel Krouk et al.   GENOME BIOLOGY

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

Phloem Protein Partners ofCucurbit aphid borne yellows virus: Possible Involvement of Phloem Proteins in Virus Transmission by Aphids

(2010) B. Bencharki et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

OryzaExpress: An Integrated Database of Gene Expression Networks and Omics Annotations in Rice

(2010) Kazuki Hamada et al.   PLANT AND CELL PHYSIOLOGY

Transcriptional reprogramming regulated by WRKY18 and WRKY40 facilitates powdery mildew infection of Arabidopsis

(2010) Shree P. Pandey et al.   PLANT JOURNAL

Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways

(2010) Jeremy A. Miller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Salicylic Acid, a Multifaceted Hormone to Combat Disease

(2009) A. Corina Vlot et al.   Annual Review of Phytopathology

Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression

(2009) Stefanie De Bodt et al.   BMC GENOMICS

Complete Genome Sequence of Citrus Huanglongbing Bacterium, ‘CandidatusLiberibacter asiaticus’ Obtained Through Metagenomics

(2009) Yongping Duan et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Examination of the Responses of Different Genotypes of Citrus to Huanglongbing (Citrus Greening) Under Different Conditions

(2009) Svetlana Y. Folimonova et al.   PHYTOPATHOLOGY

Fusarium oxysporumhijacks COI1-mediated jasmonate signaling to promote disease development in Arabidopsis

(2009) Louise F. Thatcher et al.   PLANT JOURNAL

The Nematode Resistance Allele at the rhg1 Locus Alters the Proteome and Primary Metabolism of Soybean Roots

(2009) A. J. Afzal et al.   PLANT PHYSIOLOGY

A correction for estimating error when using the Local Pooled Error Statistical Test

(2008) C. Murie et al.   BIOINFORMATICS

 C1, the pathogenicity factor of TYLCCNV, interacts with AS1 to alter leaf development and suppress selective jasmonic acid responses

(2008) J.-Y. Yang et al.   GENES & DEVELOPMENT

Response of Sweet Orange (Citrus sinensis) to ‘CandidatusLiberibacter asiaticus’ Infection: Microscopy and Microarray Analyses

(2008) Jeong-Soon Kim et al.   PHYTOPATHOLOGY

Enhanced Tolerance to Oxidative Stress in Transgenic Arabidopsis Plants Expressing Proteins of Unknown Function

(2008) S. Luhua et al.   PLANT PHYSIOLOGY