Laser microdissection coupled with RNA-seq analysis of porcine enterocytes infected with an obligate intracellular pathogen (Lawsonia intracellularis)

A gene expression atlas of the domestic pig

(2012) Tom C Freeman et al.   BMC BIOLOGY

An Alternative Method for Cultivation of Lawsonia intracellularis

(2012) F. A. Vannucci et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Metagenomic microbial community profiling using unique clade-specific marker genes

(2012) Nicola Segata et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Dual RNA-seq of pathogen and host

(2012) Alexander J. Westermann et al.   NATURE REVIEWS MICROBIOLOGY

Comparative Transcriptional Analysis of Homologous Pathogenic and Non-Pathogenic Lawsonia intracellularis Isolates in Infected Porcine Cells

(2012) Fabio A. Vannucci et al.   PLoS One

Quantitative proteomic analysis of HIV-1 infected CD4+ T cells reveals an early host response in important biological pathways: Protein synthesis, cell proliferation, and T-cell activation

(2012) Arti T. Navare et al.   VIROLOGY

Copper at the Front Line of the Host-Pathogen Battle

(2012) Richard A. Festa et al.   PLoS Pathogens

Propionibacterium acnes: infection beyond the skin

(2011) Alexandra Perry et al.   Expert Review of Anti-Infective Therapy

Microarray and cytokine analyses of field cases of pigs with diarrhoea

(2011) M. Jacobson et al.   VETERINARY MICROBIOLOGY

Manipulation of FASTQ data with Galaxy

(2010) D. Blankenberg et al.   BIOINFORMATICS

Protein structure prediction on the Web: a case study using the Phyre server

(2009) Lawrence A Kelley et al.   Nature Protocols

Improved RNA preservation for immunolabeling and laser microdissection

(2009) A. L. Brown et al.   RNA

Microarray analysis of differential expression of cell cycle and cell differentiation genes in cells infected with Lawsonia intracellularis

(2009) Yu-Sik Oh et al.   VETERINARY JOURNAL

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

ConFunc—functional annotation in the twilight zone

(2008) Mark N. Wass et al.   BIOINFORMATICS

β-Catenin stabilization imparts crypt progenitor phenotype to hyperproliferating colonic epithelia

(2008) Joseph H. Sellin et al.   EXPERIMENTAL CELL RESEARCH

Lawsonia intracellularis Contains a Gene Encoding a Functional Rickettsia-Like ATP/ADP Translocase for Host Exploitation

(2008) S. Schmitz-Esser et al.   JOURNAL OF BACTERIOLOGY