Transcriptome characterization via 454 pyrosequencing of the annelid Pristina leidyi, an emerging model for studying the evolution of regeneration

Smed454 dataset: unravelling the transcriptome of Schmidtea mediterranea

(2011) Josep F Abril et al.   BMC GENOMICS

Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

(2011) Massimo Milan et al.   BMC GENOMICS

Noggin and Noggin-Like Genes Control Dorsoventral Axis Regeneration in Planarians

(2011) M. Dolores Molina et al.   CURRENT BIOLOGY

Wnt gene loss in flatworms

(2011) Nick Riddiford et al.   DEVELOPMENT GENES AND EVOLUTION

Role of c-Jun N-terminal kinase activation in blastema formation during planarian regeneration

(2011) Junichi Tasaki et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

The Cellular Basis for Animal Regeneration

(2011) Elly M. Tanaka et al.   DEVELOPMENTAL CELL

Evolution of a novel developmental trajectory: fission is distinct from regeneration in the annelid Pristina leidyi

(2011) Eduardo E. Zattara et al.   EVOLUTION & DEVELOPMENT

De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics

(2011) C. Adamidi et al.   GENOME RESEARCH

Transcriptome Sequencing and De Novo Analysis for Yesso Scallop (Patinopecten yessoensis) Using 454 GS FLX

(2011) Rui Hou et al.   PLoS One

Dishevelled is essential for neural connectivity and planar cell polarity in planarians

(2011) M. Almuedo-Castillo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags

(2010) Bo-Young Lee et al.   BMC GENOMICS

Insights into shell deposition in the Antarctic bivalve Laternula elliptica: gene discovery in the mantle transcriptome using 454 pyrosequencing

(2010) Melody S Clark et al.   BMC GENOMICS

A conserved germline multipotency program

(2010) C. E. Juliano et al.   DEVELOPMENT

Regeneration and transdetermination: The role of wingless and its regulation

(2010) Margrit Schubiger et al.   DEVELOPMENTAL BIOLOGY

The RNA-Seq approach to studying the expression of mosquito mitochondrial genes

(2010) M. Neira-Oviedo et al.   INSECT MOLECULAR BIOLOGY

Characterizing the Embryonic Transcriptome of the Snail Ilyanassa

(2010) J. D. Lambert et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Differential Localization of mRNAs During Early Development in the Mollusc, Crepidula fornicata

(2010) Jonathan J. Henry et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Evolutionary Loss of Animal Regeneration: Pattern and Process

(2010) A. E. Bely   INTEGRATIVE AND COMPARATIVE BIOLOGY

Evolutionary Dynamics of the wnt Gene Family: A Lophotrochozoan Perspective

(2010) S.-J. Cho et al.   MOLECULAR BIOLOGY AND EVOLUTION

Design, Validation and Annotation of Transcriptome-Wide Oligonucleotide Probes for the Oligochaete Annelid Eisenia fetida

(2010) Ping Gong et al.   PLoS One

Gene Expression Profile in the Anterior Regeneration of the Earthworm Using Expressed Sequence Tags

(2009) Sung-Jin CHO et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Characterization of the stem cell system of the acoel Isodiametra pulchra

(2009) Katrien De Mulder et al.   BMC DEVELOPMENTAL BIOLOGY

Comparison of next generation sequencing technologies for transcriptome characterization

(2009) P Kerr Wall et al.   BMC GENOMICS

Smed-Evi/Wntless is required for  -catenin-dependent and -independent processes during planarian regeneration

(2009) T. Adell et al.   DEVELOPMENT

Stem cells are differentially regulated during development, regeneration and homeostasis in flatworms

(2009) Katrien De Mulder et al.   DEVELOPMENTAL BIOLOGY

Multiple Wnts are involved in Hydra organizer formation and regeneration

(2009) Tobias Lengfeld et al.   DEVELOPMENTAL BIOLOGY

RNA-Seq—quantitative measurement of expression through massively parallel RNA-sequencing

(2009) Brian T. Wilhelm et al.   METHODS

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data

(2009) J. M. Ruijter et al.   NUCLEIC ACIDS RESEARCH

Planarian Hedgehog/Patched establishes anterior–posterior polarity by regulating Wnt signaling

(2009) Shigenobu Yazawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A wound-induced Wnt expression program controls planarian regeneration polarity

(2009) C. P. Petersen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Latent regeneration abilities persist following recent evolutionary loss in asexual annelids

(2009) A. E. Bely et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Planarian Hh Signaling Regulates Regeneration Polarity and Links Hh Pathway Evolution to Cilia

(2009) J. C. Rink et al.   SCIENCE

Evolution of animal regeneration: re-emergence of a field

(2009) Alexandra E. Bely et al.   TRENDS IN ECOLOGY & EVOLUTION

Comparative Aspects of Animal Regeneration

(2008) Jeremy P. Brockes et al.   Annual Review of Cell and Developmental Biology

EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarray expression data integration

(2008) Javier Forment et al.   BMC BIOINFORMATICS

Identification of genes associated with regenerative success of Xenopus laevis hindlimbs

(2008) Esther J Pearl et al.   BMC DEVELOPMENTAL BIOLOGY

Silencing of Smed- catenin1 generates radial-like hypercephalized planarians

(2008) M. Iglesias et al.   DEVELOPMENT

Planarian GSK3s are involved in neural regeneration

(2008) Teresa Adell et al.   DEVELOPMENT GENES AND EVOLUTION

Requirement for Wnt and FGF signaling in Xenopus tadpole tail regeneration

(2008) Gufa Lin et al.   DEVELOPMENTAL BIOLOGY

Two msh/msx-related genes, Djmsh1 and Djmsh2, contribute to the early blastema growth during planarian head regeneration

(2008) Linda Mannini et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Normalization of full-length enriched cDNA

(2008) Ekaterina A. Bogdanova et al.   Molecular BioSystems

The development and impact of 454 sequencing

(2008) Jonathan M Rothberg et al.   NATURE BIOTECHNOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

 -Catenin Defines Head Versus Tail Identity During Planarian Regeneration and Homeostasis

(2007) K. A. Gurley et al.   SCIENCE

Smed- catenin-1 Is Required for Anteroposterior Blastema Polarity in Planarian Regeneration

(2007) C. P. Petersen et al.   SCIENCE