QUDeX-MS: hydrogen/deuterium exchange calculation for mass spectra with resolved isotopic fine structure
出版年份 2014 全文链接
标题
QUDeX-MS: hydrogen/deuterium exchange calculation for mass spectra with resolved isotopic fine structure
作者
关键词
Hydrogen/deuterium exchange, Isotopic fine structure, Fourier transform ion cyclotron resonance, Mass spectrometry, Protein structure, Protein analysis
出版物
BMC BIOINFORMATICS
Volume 15, Issue 1, Pages -
出版商
Springer Nature
发表日期
2014-12-11
DOI
10.1186/s12859-014-0403-1
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Hexicon 2: Automated Processing of Hydrogen-Deuterium Exchange Mass Spectrometry Data with Improved Deuteration Distribution Estimation
- (2014) Robert Lindner et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Dissecting the Effect of RNA Aptamer Binding on the Dynamics of Plasminogen Activator Inhibitor 1 Using Hydrogen/Deuterium Exchange Mass Spectrometry
- (2013) Morten B. Trelle et al. ACS Chemical Biology
- Autophaser: An Algorithm for Automated Generation of Absorption Mode Spectra for FT-ICR MS
- (2013) David P. A. Kilgour et al. ANALYTICAL CHEMISTRY
- Application of Atmospheric Pressure Photo Ionization Hydrogen/Deuterium Exchange High-Resolution Mass Spectrometry for the Molecular Level Speciation of Nitrogen Compounds in Heavy Crude Oils
- (2013) Yunju Cho et al. ANALYTICAL CHEMISTRY
- Resolving Isotopic Fine Structure to Detect and Quantify Natural Abundance- and Hydrogen/Deuterium Exchange-Derived Isotopomers
- (2013) Qian Liu et al. ANALYTICAL CHEMISTRY
- Enumeration of Labile Hydrogens in Natural Organic Matter by Use of Hydrogen/Deuterium Exchange Fourier Transform Ion Cyclotron Resonance Mass Spectrometry
- (2013) Yury Kostyukevich et al. ANALYTICAL CHEMISTRY
- S-Nitrosation Destabilizes Glutathione Transferase P1-1
- (2013) David Balchin et al. BIOCHEMISTRY
- ChemCalc: A Building Block for Tomorrow’s Chemical Infrastructure
- (2013) Luc Patiny et al. Journal of Chemical Information and Modeling
- Analysis of Overlapped and Noisy Hydrogen/Deuterium Exchange Mass Spectra
- (2013) Miklos Guttman et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Mutation of Y407 in the CH3 domain dramatically alters glycosylation and structure of human IgG
- (2013) Rebecca J. Rose et al. mAbs
- Oligomerization Interface of RAGE Receptor Revealed by MS-Monitored Hydrogen Deuterium Exchange
- (2013) Ewa Sitkiewicz et al. PLoS One
- Top-down structural analysis of posttranslationally modified proteins by Fourier transform ion cyclotron resonance-MS with hydrogen/deuterium exchange and electron capture dissociation
- (2013) Jingxi Pan et al. PROTEOMICS
- Properties of isotope patterns and their utility for peptide identification in large-scale proteomic experiments
- (2013) Satoshi Okawa et al. RAPID COMMUNICATIONS IN MASS SPECTROMETRY
- Absorption-Mode: The Next Generation of Fourier Transform Mass Spectra
- (2012) Yulin Qi et al. ANALYTICAL CHEMISTRY
- Highly Accurate Chemical Formula Prediction Tool Utilizing High-Resolution Mass Spectra, MS/MS Fragmentation, Heuristic Rules, and Isotope Pattern Matching
- (2012) Tomáš Pluskal et al. ANALYTICAL CHEMISTRY
- Effects of the Iowa and Milano Mutations on Apolipoprotein A-I Structure and Dynamics Determined by Hydrogen Exchange and Mass Spectrometry
- (2012) Palaniappan Sevugan Chetty et al. BIOCHEMISTRY
- Structure and Dynamics of Small Soluble Aβ(1–40) Oligomers Studied by Top-Down Hydrogen Exchange Mass Spectrometry
- (2012) Jingxi Pan et al. BIOCHEMISTRY
- Glutathionylation Induced Structural Changes in Oxy Human Hemoglobin Analyzed by Backbone Amide Hydrogen/Deuterium Exchange and MALDI-Mass Spectrometry
- (2012) Gopa Mitra et al. BIOCONJUGATE CHEMISTRY
- Orbitrap mass spectrometry with resolving powers above 1,000,000
- (2012) Eduard Denisov et al. INTERNATIONAL JOURNAL OF MASS SPECTROMETRY
- Partial cooperative unfolding in proteins as observed by hydrogen exchange mass spectrometry
- (2012) John R. Engen et al. INTERNATIONAL REVIEWS IN PHYSICAL CHEMISTRY
- Dynamic Structural Changes Are Observed upon Collagen and Metal Ion Binding to the Integrin α1 I Domain
- (2012) Paul H. Weinreb et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Pulsed hydrogen/deuterium exchange mass spectrometry for time-resolved membrane protein folding studies
- (2012) Anil Khanal et al. JOURNAL OF MASS SPECTROMETRY
- The role of conformational flexibility in β2-microglobulin amyloid fibril formation at neutral pH
- (2012) John P. Hodkinson et al. RAPID COMMUNICATIONS IN MASS SPECTROMETRY
- Advances and challenges in analytical characterization of biotechnology products: Mass spectrometry-based approaches to study properties and behavior of protein therapeutics
- (2011) Igor A. Kaltashov et al. BIOTECHNOLOGY ADVANCES
- HDX-Analyzer: a novel package for statistical analysis of protein structure dynamics
- (2011) Sanmin Liu et al. BMC BIOINFORMATICS
- Differential hydrogen/deuterium exchange mass spectrometry analysis of protein–ligand interactions
- (2011) Michael J Chalmers et al. Expert Review of Proteomics
- Petroleomics: advanced molecular probe for petroleum heavy ends
- (2011) Chang S. Hsu et al. JOURNAL OF MASS SPECTROMETRY
- Phase Correction of Fourier Transform Ion Cyclotron Resonance Mass Spectra Using MatLab
- (2011) Yulin Qi et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Automated Broadband Phase Correction of Fourier Transform Ion Cyclotron Resonance Mass Spectra
- (2010) Feng Xian et al. ANALYTICAL CHEMISTRY
- Automated detection and analysis of bimodal isotope peak distributions in H/D exchange mass spectrometry using HeXicon
- (2010) Anna Kreshuk et al. INTERNATIONAL JOURNAL OF MASS SPECTROMETRY
- MSTools—Web based application for visualization and presentation of HXMS data
- (2010) Daniel Kavan et al. INTERNATIONAL JOURNAL OF MASS SPECTROMETRY
- Automated data reduction for hydrogen/deuterium exchange experiments, enabled by high-resolution fourier transform ion cyclotron resonance mass spectrometry
- (2010) Sasa Kazazic et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Direct evidence for a two-state protein unfolding transition from hydrogen-deuterium exchange, mass spectrometry, and NMR
- (2010) Qian Yi et al. PROTEIN SCIENCE
- Impact of oxidation on protein therapeutics: Conformational dynamics of intact and oxidized acid-β-glucocerebrosidase at near-physiological pH
- (2010) Cedric E. Bobst et al. PROTEIN SCIENCE
- Fourier transform ion cyclotron resonance cell with dynamic harmonization of the electric field in the whole volume by shaping of the excitation and detection electrode assembly
- (2010) Ivan A. Boldin et al. RAPID COMMUNICATIONS IN MASS SPECTROMETRY
- Analysis of Protein Conformation and Dynamics by Hydrogen/Deuterium Exchange MS
- (2009) John R. Engen ANALYTICAL CHEMISTRY
- Hydra: software for tailored processing of H/D exchange data from MS or tandem MS analyses
- (2009) Gordon W Slysz et al. BMC BIOINFORMATICS
- A Common Property of Amyotrophic Lateral Sclerosis-associated Variants
- (2009) Kathleen S. Molnar et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Distinct Structures of Scrapie Prion Protein (PrPSc)-seededVersusSpontaneous Recombinant Prion Protein Fibrils Revealed by Hydrogen/Deuterium Exchange
- (2009) Vytautas Smirnovas et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Conformation and dynamics of biopharmaceuticals: Transition of mass spectrometry-based tools from academe to industry
- (2009) Igor A. Kaltashov et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Enhanced Digestion Efficiency, Peptide Ionization Efficiency, and Sequence Resolution for Protein Hydrogen/Deuterium Exchange Monitored by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry
- (2008) Hui-Min Zhang et al. ANALYTICAL CHEMISTRY
- Detection and Characterization of Altered Conformations of Protein Pharmaceuticals Using Complementary Mass Spectrometry-Based Approaches
- (2008) Cedric E. Bobst et al. ANALYTICAL CHEMISTRY
- "TOF2H": A precision toolbox for rapid, high density/high coverage hydrogen-deuterium exchange mass spectrometry via an LC-MALDI approach, covering the data pipeline from spectral acquisition to HDX rate analysis
- (2008) Pornpat Nikamanon et al. BMC BIOINFORMATICS
- HD desktop: An integrated platform for the analysis and visualization of H/D exchange data
- (2008) Bruce D. Pascal et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
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