mirCoX: a database of miRNA-mRNA expression correlations derived from RNA-seq meta-analysis

SRAdb: query and use public next-generation sequencing data from within R

(2013) Yuelin Zhu et al.   BMC BIOINFORMATICS

Potential roles of microRNAs in regulating long intergenic noncoding RNAs

(2013) Liran Juan et al.   BMC Medical Genomics

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs

(2012) Maria D. Paraskevopoulou et al.   NUCLEIC ACIDS RESEARCH

A ceRNA Hypothesis: The Rosetta Stone of a Hidden RNA Language?

(2011) Leonardo Salmena et al.   CELL

Practical Aspects of microRNA Target Prediction

(2011) T. M. Witkos et al.   CURRENT MOLECULAR MEDICINE

HOCTAR database: A unique resource for microRNA target prediction

(2011) Vincenzo Alessandro Gennarino et al.   GENE

MTar: a computational microRNA target prediction architecture for human transcriptome

(2010) Vinod Chandra et al.   BMC BIOINFORMATICS

MicroRNA-205-directed transcriptional activation of tumor suppressor genes in prostate cancer

(2010) Shahana Majid et al.   CANCER

RNAa Is Conserved in Mammalian Cells

(2010) Vera Huang et al.   PLoS One

Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites

(2010) Doron Betel et al.   GENOME BIOLOGY

MirZ: an integrated microRNA expression atlas and target prediction resource

(2009) J. Hausser et al.   NUCLEIC ACIDS RESEARCH

miRecords: an integrated resource for microRNA-target interactions

(2008) F. Xiao et al.   NUCLEIC ACIDS RESEARCH