A systematic comparison of the MetaCyc and KEGG pathway databases

MetRxn: a knowledgebase of metabolites and reactions spanning metabolic models and databases

(2012) Akhil Kumar et al.   BMC BIOINFORMATICS

The Pathway Tools Pathway Prediction Algorithm

(2012) Peter D. Karp et al.   Standards in Genomic Sciences

MetaMerge: scaling up genome-scale metabolic reconstructions, with application to Mycobacterium tuberculosis

(2012) Leonid Chindelevitch et al.   GENOME BIOLOGY

BKM-react, an integrated biochemical reaction database

(2011) Maren Lang et al.   BMC BIOCHEMISTRY

Critical assessment of human metabolic pathway databases: a stepping stone for future integration

(2011) Miranda D Stobbe et al.   BMC Systems Biology

Consistency, comprehensiveness, and compatibility of pathway databases

(2010) Donny Soh et al.   BMC BIOINFORMATICS

Machine learning methods for metabolic pathway prediction

(2010) Joseph M Dale et al.   BMC BIOINFORMATICS

High-throughput generation, optimization and analysis of genome-scale metabolic models

(2010) Christopher S Henry et al.   NATURE BIOTECHNOLOGY

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY

Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology

(2009) P. D. Karp et al.   BRIEFINGS IN BIOINFORMATICS