Membrane protein orientation and refinement using a knowledge-based statistical potential

Three-Dimensional Structures of Membrane Proteins from Genomic Sequencing

(2012) Thomas A. Hopf et al.   CELL

PDBTM: Protein Data Bank of transmembrane proteins after 8 years

(2012) Dániel Kozma et al.   NUCLEIC ACIDS RESEARCH

Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis

(2012) T. Nugent et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Knowledge-Based Potential for Positioning Membrane-Associated Structures and Assessing Residue-Specific Energetic Contributions

(2012) Chaim A. Schramm et al.   STRUCTURE

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

(2011) David T. Jones et al.   BIOINFORMATICS

OPM database and PPM web server: resources for positioning of proteins in membranes

(2011) Mikhail A. Lomize et al.   NUCLEIC ACIDS RESEARCH

A knowledge-based potential highlights unique features of membrane α-helical and β-barrel protein insertion and folding

(2011) Daniel Hsieh et al.   PROTEIN SCIENCE

MEDELLER: homology-based coordinate generation for membrane proteins

(2010) Sebastian Kelm et al.   BIOINFORMATICS

How significant is a protein structure similarity with TM-score = 0.5?

(2010) Jinrui Xu et al.   BIOINFORMATICS

Structure of a cation-bound multidrug and toxic compound extrusion transporter

(2010) Xiao He et al.   NATURE

Prediction of the human membrane proteome

(2010) Linn Fagerberg et al.   PROTEOMICS

Control of Membrane Protein Topology by a Single C-Terminal Residue

(2010) S. Seppala et al.   SCIENCE

Predicting Transmembrane Helix Packing Arrangements using Residue Contacts and a Force-Directed Algorithm

(2010) Timothy Nugent et al.   PLoS Computational Biology

Prediction of membrane protein structures with complex topologies using limited constraints

(2009) P. Barth et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Coarse-grained simulation: a high-throughput computational approach to membrane proteins

(2008) Mark S.P. Sansom et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar

(2008) Håkan Viklund et al.   BIOINFORMATICS

SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology

(2008) Håkan Viklund et al.   BIOINFORMATICS

Prediction of membrane-protein topology from first principles

(2008) A. Bernsel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA