Systematic classification of non-coding RNAs by epigenomic similarity

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Epigenetics: Core misconcept

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Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells

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Using epigenetic mechanisms to understand the impact of common disease causing alleles

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Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

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Genome-wide Epigenetic Data Facilitate Understanding of Disease Susceptibility Association Studies

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Landscape of transcription in human cells

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Modeling gene expression using chromatin features in various cellular contexts

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GenomeRunner: automating genome exploration

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High-throughput processing and normalization of one-color microarrays for transcriptional meta-analyses

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Predicting gene ontology from a global meta-analysis of 1-color microarray experiments

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No-Nonsense Functions for Long Noncoding RNAs

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MacroRNA underdogs in a microRNA world: Evolutionary, regulatory, and biomedical significance of mammalian long non-protein-coding RNA

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Short RNAs Are Transcribed from Repressed Polycomb Target Genes and Interact with Polycomb Repressive Complex-2

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Discovery and characterization of chromatin states for systematic annotation of the human genome

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A Large Fraction of Extragenic RNA Pol II Transcription Sites Overlap Enhancers

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RNA Polymerase III Detects Cytosolic DNA and Induces Type I Interferons through the RIG-I Pathway

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CTCF: Master Weaver of the Genome

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Evolution and Functions of Long Noncoding RNAs

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An operational definition of epigenetics

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RIG-I-dependent sensing of poly(dA:dT) through the induction of an RNA polymerase III–transcribed RNA intermediate

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Long non-coding RNAs: insights into functions

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Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

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The Genetic Signatures of Noncoding RNAs

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Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

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