FluShuffle and FluResort: new algorithms to identify reassorted strains of the influenza virus by mass spectrometry

Evolution of H5N1 influenza virus through proteotyping of hemagglutinin with high resolution mass spectrometry

(2011) Ji-Won Ha et al.   ANALYST

FluReF, an automated flu virus reassortment finder based on phylogenetic trees

(2011) Alisa Yurovsky et al.   BMC GENOMICS

Proteotyping to Establish Gene Origin within Reassortant Influenza Viruses

(2011) Ji-won Ha et al.   PLoS One

Rapid Differentiation of Seasonal and Pandemic H1N1 Influenza through Proteotyping of Viral Neuraminidase with Mass Spectrometry

(2010) Alexander B. Schwahn et al.   ANALYTICAL CHEMISTRY

FluTyper-an algorithm for automated typing and subtyping of the influenza virus from high resolution mass spectral data

(2010) Jason WH Wong et al.   BMC BIOINFORMATICS

Methods for molecular surveillance of influenza

(2010) Ruixue Wang et al.   Expert Review of Anti-Infective Therapy

A phylogenetic approach to detecting reassortments in viruses with segmented genomes

(2010) Yoshiyuki Suzuki   GENE

Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identification

(2010) Zengyou He et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Typing of human and animal strains of influenza virus with conserved signature peptides of matrix M1 protein by high resolution mass spectrometry

(2010) Alexander B. Schwahn et al.   JOURNAL OF VIROLOGICAL METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Interspecies and intraspecies transmission of influenza A viruses: viral, host and environmental factors

(2010) Hadi M. Yassine et al.   ANIMAL HEALTH RESEARCH REVIEWS

Signature peptides of influenza nucleoprotein for the typing and subtyping of the virus by high resolution mass spectrometry

(2009) Alexander B. Schwahn et al.   ANALYST

Subtyping of the Influenza Virus by High Resolution Mass Spectrometry

(2009) Alexander B. Schwahn et al.   ANALYTICAL CHEMISTRY

Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic

(2009) Gavin J. D. Smith et al.   NATURE

Advancing full length genome sequencing for human RNA viral pathogens

(2008) Appolinaire Djikeng et al.   Future Virology

Non-random reassortment in human influenza A viruses

(2008) Raul Rabadan et al.   Influenza and Other Respiratory Viruses

Multiple Reassortment Events in the Evolutionary History of H1N1 Influenza A Virus Since 1918

(2008) Martha I. Nelson et al.   PLoS Pathogens