ProDis-ContSHC: learning protein dissimilarity measures and hierarchical context coherently for protein-protein comparison in protein database retrieval

MiRenSVM: towards better prediction of microRNA precursors using an ensemble SVM classifier with multi-loop features

(2011) Jiandong Ding et al.   BMC BIOINFORMATICS

Dynamic programming re-ranking for PPI interactor and pair extraction in full-text articles

(2011) Richard Tsai et al.   BMC BIOINFORMATICS

PheMaDB: A solution for storage, retrieval, and analysis of high throughput phenotype data

(2011) Wenling E Chang et al.   BMC BIOINFORMATICS

Structator: fast index-based search for RNA sequence-structure patterns

(2011) Fernando Meyer et al.   BMC BIOINFORMATICS

Integrating multiple protein-protein interaction networks to prioritize disease genes: a Bayesian regression approach

(2011) Wangshu Zhang et al.   BMC BIOINFORMATICS

pROC: an open-source package for R and S+ to analyze and compare ROC curves

(2011) Xavier Robin et al.   BMC BIOINFORMATICS

Predicting protein–protein interactions from protein sequences using meta predictor

(2010) Jun-Feng Xia et al.   AMINO ACIDS

Using manifold embedding for assessing and predicting protein interactions from high-throughput experimental data

(2010) Z.-H. You et al.   BIOINFORMATICS

Incorporating significant amino acid pairs to identify O-linked glycosylation sites on transmembrane proteins and non-transmembrane proteins

(2010) Shu-An Chen et al.   BMC BIOINFORMATICS

Predicting domain-domain interaction based on domain profiles with feature selection and support vector machines

(2010) Alvaro J González et al.   BMC BIOINFORMATICS

Clustering of protein families into functional subtypes using Relative Complexity Measure with reduced amino acid alphabets

(2010) Aydin Albayrak et al.   BMC BIOINFORMATICS

A fast indexing approach for protein structure comparison

(2010) Lei Zhang et al.   BMC BIOINFORMATICS

Functional classification of proteins based on projection of amino acid sequences: application for prediction of protein kinase substrates

(2010) Boris Sobolev et al.   BMC BIOINFORMATICS

A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network

(2010) Zhu-Hong You et al.   BMC BIOINFORMATICS

APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility

(2010) Jun-Feng Xia et al.   BMC BIOINFORMATICS

Predicting protein–protein interactions from sequence using correlation coefficient and high-quality interaction dataset

(2009) Ming-Guang Shi et al.   AMINO ACIDS

GPAT: Retrieval of genomic annotation from large genomic position datasets

(2009) Arnaud Krebs et al.   BMC BIOINFORMATICS

Tableau-based protein substructure search using quadratic programming

(2009) Alex Stivala et al.   BMC BIOINFORMATICS

Protein comparison at the domain architecture level

(2009) Byungwook Lee et al.   BMC BIOINFORMATICS

LipocalinPred: a SVM-based method for prediction of lipocalins

(2009) Jayashree Ramana et al.   BMC BIOINFORMATICS

Structural search and retrieval using a tableau representation of protein folding patterns

(2008) Arun S. Konagurthu et al.   BIOINFORMATICS

Comparison of methods for estimating the nucleotide substitution matrix

(2008) Maribeth Oscamou et al.   BMC BIOINFORMATICS

Fast protein tertiary structure retrieval based on global surface shape similarity

(2008) Lee Sael et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS