A novel method to compare protein structures using local descriptors

FlexSnap: Flexible Non-sequential Protein Structure Alignment

(2010) Saeed Salem et al.   Algorithms for Molecular Biology

Towards optimal alignment of protein structure distance matrices

(2010) Inken Wohlers et al.   BIOINFORMATICS

Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue–residue contacts

(2009) Patrik Björkholm et al.   BIOINFORMATICS

Flexible structural protein alignment by a sequence of local transformations

(2009) Jairo Rocha et al.   BIOINFORMATICS

Advances and pitfalls of protein structural alignment

(2009) Hitomi Hasegawa et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Bridging protein local structures and protein functions

(2008) Zhi-Ping Liu et al.   AMINO ACIDS

The meaning of alignment: lessons from structural diversity

(2008) Walter Pirovano et al.   BMC BIOINFORMATICS

Exploring the structure and function paradigm

(2008) Oliver C. Redfern et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Interaction Model Based on Local Protein Substructures Generalizes to the Entire Structural Enzyme-Ligand Space

(2008) Helena Strömbergsson et al.   Journal of Chemical Information and Modeling

Novel protein folds and their nonsequential structural analogs

(2008) Aysam Guerler et al.   PROTEIN SCIENCE

Local descriptors of protein structure: A systematic analysis of the sequence-structure relationship in proteins using short- and long-range interactions

(2008) Torgeir R. Hvidsten et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Sequence-similar, structure-dissimilar protein pairs in the PDB

(2007) Mickey Kosloff et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS