POPISK: T-cell reactivity prediction using support vector machines and string kernels

Exploiting physico-chemical properties in string kernels

(2010) Nora C Toussaint et al.   BMC BIOINFORMATICS

Genetic algorithm optimization in drug design QSAR: Bayesian-regularized genetic neural networks (BRGNN) and genetic algorithm-optimized support vectors machines (GA-SVM)

(2010) Michael Fernandez et al.   MOLECULAR DIVERSITY

Computational Immunology Meets Bioinformatics: The Use of Prediction Tools for Molecular Binding in the Simulation of the Immune System

(2010) Nicolas Rapin et al.   PLoS One

Prediction of HLA-DQ8 β cell peptidome using a computational program and its relationship to autoreactive T cells

(2009) Kuan Y. Chang et al.   INTERNATIONAL IMMUNOLOGY

Antigen processing influences HIV-specific cytotoxic T lymphocyte immunodominance

(2009) Stefan Tenzer et al.   NATURE IMMUNOLOGY

A Mathematical Framework for the Selection of an Optimal Set of Peptides for Epitope-Based Vaccines

(2009) Nora C. Toussaint et al.   PLoS Computational Biology

In silico quantitative prediction of peptides binding affinity to human MHC molecule: an intuitive quantitative structure–activity relationship approach

(2008) F. Tian et al.   AMINO ACIDS

Using multidimensional patterns of amino acid attributes for QSAR analysis of peptides

(2008) G. Liang et al.   AMINO ACIDS

Computational identification of ubiquitylation sites from protein sequences

(2008) Chun-Wei Tung et al.   BMC BIOINFORMATICS

A set of new amino acid descriptors applied in prediction of MHC class I binding peptides

(2008) Guizhao Liang et al.   EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY

Predicting linear B‐cell epitopes using string kernels

(2008) Yasser EL‐Manzalawy et al.   JOURNAL OF MOLECULAR RECOGNITION

HIV-1 coreceptor usage prediction without multiple alignments: an application of string kernels

(2008) Sébastien Boisvert et al.   Retrovirology