Genome engineering and gene expression control for bacterial strain development

Genome-scale genetic engineering in Escherichia coli

(2013) Jaehwan Jeong et al.   BIOTECHNOLOGY ADVANCES

The centrality of RNA for engineering gene expression

(2013) James Chappell et al.   Biotechnology Journal

Recombineering to homogeneity: extension of multiplex recombineering to large-scale genome editing

(2013) Nanette R. Boyle et al.   Biotechnology Journal

Rapid one-step inactivation of single or multiple genes inEscherichia coli

(2013) Chan Woo Song et al.   Biotechnology Journal

Systems metabolic engineering for the production of bio-nylon precursor

(2013) Hiroshi Shimizu   Biotechnology Journal

Metabolic engineering ofEscherichia colifor the production of phenol from glucose

(2013) Byoungjin Kim et al.   Biotechnology Journal

Rapid targeted gene disruption in Bacillus anthracis

(2013) Roland J Saldanha et al.   BMC BIOTECHNOLOGY

Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression

(2013) Lei S. Qi et al.   CELL

Generalized bacterial genome editing using mobile group II introns and Cre-lox

(2013) P. J. Enyeart et al.   Molecular Systems Biology

Genome-scale engineering for systems and synthetic biology

(2013) K. M. Esvelt et al.   Molecular Systems Biology

Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs

(2013) Dokyun Na et al.   NATURE BIOTECHNOLOGY

Efficient genome editing in zebrafish using a CRISPR-Cas system

(2013) Woong Y Hwang et al.   NATURE BIOTECHNOLOGY

RNA-guided editing of bacterial genomes using CRISPR-Cas systems

(2013) Wenyan Jiang et al.   NATURE BIOTECHNOLOGY

Design and use of synthetic regulatory small RNAs to control gene expression in Escherichia coli

(2013) Seung Min Yoo et al.   Nature Protocols

Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system

(2013) David Bikard et al.   NUCLEIC ACIDS RESEARCH

RNA-Guided Human Genome Engineering via Cas9

(2013) P. Mali et al.   SCIENCE

Multiplex Genome Engineering Using CRISPR/Cas Systems

(2013) L. Cong et al.   SCIENCE

ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering

(2013) Thomas Gaj et al.   TRENDS IN BIOTECHNOLOGY

RNA-programmed genome editing in human cells

(2013) Martin Jinek et al.   eLife

Genetically Modified Strains of Ralstonia eutropha H16 with β-Ketothiolase Gene Deletions for Production of Copolyesters with Defined 3-Hydroxyvaleric Acid Contents

(2012) Nicole Lindenkamp et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bio-based production of C2-C6 platform chemicals

(2012) Yu-Sin Jang et al.   BIOTECHNOLOGY AND BIOENGINEERING

Red recombinase assisted gene replacement in Klebsiella pneumoniae

(2012) Dong Wei et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

A CRISPR Approach to Gene Targeting

(2012) Dana Carroll   MOLECULAR THERAPY

RNA-mediated programmable DNA cleavage

(2012) Rodolphe Barrangou   NATURE BIOTECHNOLOGY

Genome-scale promoter engineering by coselection MAGE

(2012) Harris H Wang et al.   NATURE METHODS

The excludon: a new concept in bacterial antisense RNA-mediated gene regulation

(2012) Nina Sesto et al.   NATURE REVIEWS MICROBIOLOGY

Enhanced multiplex genome engineering through co-operative oligonucleotide co-selection

(2012) Peter A. Carr et al.   NUCLEIC ACIDS RESEARCH

Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria

(2012) G. Gasiunas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

(2012) M. Jinek et al.   SCIENCE

Multiplexed in Vivo His-Tagging of Enzyme Pathways for in Vitro Single-Pot Multienzyme Catalysis

(2012) Harris H. Wang et al.   ACS Synthetic Biology

Evolution and classification of the CRISPR–Cas systems

(2011) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

Artificial trans -encoded small non-coding RNAs specifically silence the selected gene expression in bacteria

(2011) Shuai Man et al.   NUCLEIC ACIDS RESEARCH

Precise Manipulation of Chromosomes in Vivo Enables Genome-Wide Codon Replacement

(2011) Farren J. Isaacs et al.   SCIENCE

CRISPR/Cas System and Its Role in Phage-Bacteria Interactions

(2010) Hélène Deveau et al.   Annual Review of Microbiology

I-SceI endonuclease: a new tool for DNA repair studies and genetic manipulations in streptomycetes

(2010) Theresa Siegl et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Bioengineering of microorganisms for C3 to C5 alcohols production

(2010) Samuel E. Mainguet et al.   Biotechnology Journal

Advanced biofuel production in microbes

(2010) Pamela P. Peralta-Yahya et al.   Biotechnology Journal

Lambda Red Recombineering in Escherichia coli Occurs Through a Fully Single-Stranded Intermediate

(2010) J. A. Mosberg et al.   GENETICS

The CRISPR/Cas bacterial immune system cleaves bacteriophage and plasmid DNA

(2010) Josiane E. Garneau et al.   NATURE

Genome editing with engineered zinc finger nucleases

(2010) Fyodor D. Urnov et al.   NATURE REVIEWS GENETICS

CRISPR/Cas, the Immune System of Bacteria and Archaea

(2010) P. Horvath et al.   SCIENCE

New generation of loxP-mutated deletion cassettes for the genetic manipulation of yeast natural isolates

(2010) Zorana Carter et al.   YEAST

Versatile Dual-Technology System for Markerless Allele Replacement in Burkholderia pseudomallei

(2009) C. M. Lopez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Homologous overexpression of a lipase from Burkholderia cepacia using the lambda Red recombinase system

(2009) Bin Jia et al.   BIOTECHNOLOGY LETTERS

RNA-Guided RNA Cleavage by a CRISPR RNA-Cas Protein Complex

(2009) Caryn R. Hale et al.   CELL

Utilization of an unstable plasmid and the I-SceI endonuclease to generate routine markerless deletion mutants in Francisella tularensis

(2009) Joseph Horzempa et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Targeted gene disruption in Francisella tularensis by group II introns

(2009) S RODRIGUEZ   METHODS

Programming cells by multiplex genome engineering and accelerated evolution

(2009) Harris H. Wang et al.   NATURE

Linear group II intron RNAs can retrohome in eukaryotes and may use nonhomologous end-joining for cDNA ligation

(2009) F. Zhuang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Use of the lambda Red recombinase system to rapidly generate mutants in Pseudomonas aeruginosa

(2008) Biliana Lesic et al.   BMC MOLECULAR BIOLOGY

Rapid and efficient construction of markerless deletions in the Escherichia coli genome

(2008) B. J. Yu et al.   NUCLEIC ACIDS RESEARCH

Group II Intron-Based Gene Targeting Reactions in Eukaryotes

(2008) Marta Mastroianni et al.   PLoS One

Development of a markerless gene knock-out system forMannheimia succiniciproducensusing a temperature-sensitive plasmid

(2007) Ji Mahn Kim et al.   FEMS MICROBIOLOGY LETTERS