Validation of RetroPath, a computer-aided design tool for metabolic pathway engineering

Natural products: A continuing source of novel drug leads

(2013) Gordon M. Cragg et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

COBRApy: COnstraints-Based Reconstruction and Analysis for Python

(2013) Ali Ebrahim et al.   BMC Systems Biology

Subinhibitory concentrations of pinocembrin exert anti-Staphylococcus aureusactivity by reducingα-toxin expression

(2013) L.W. Soromou et al.   JOURNAL OF APPLIED MICROBIOLOGY

Retropath: Automated Pipeline for Embedded Metabolic Circuits

(2013) Pablo Carbonell et al.   ACS Synthetic Biology

Redirector: Designing Cell Factories by Reconstructing the Metabolic Objective

(2013) Graham Rockwell et al.   PLoS Computational Biology

ECOH: An Enzyme Commission number predictor using mutual information and a support vector machine

(2012) Yoshihiko Matsuta et al.   BIOINFORMATICS

Production of bulk chemicals via novel metabolic pathways in microorganisms

(2012) Jae Ho Shin et al.   BIOTECHNOLOGY ADVANCES

Pinocembrin protects against β-amyloid-induced toxicity in neurons through inhibiting receptor for advanced glycation end products (RAGE)-independent signaling pathways and regulating mitochondrion-mediated apoptosis

(2012) Rui Liu et al.   BMC Medicine

Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms

(2012) Pablo Carbonell et al.   BMC Systems Biology

A retrosynthetic biology approach to therapeutics: from conception to delivery

(2012) Anne-Gaëlle Planson et al.   CURRENT OPINION IN BIOTECHNOLOGY

Computational tools for metabolic engineering

(2012) Wilbert B. Copeland et al.   METABOLIC ENGINEERING

Expanding the chemical palate of cells by combining systems biology and metabolic engineering

(2012) Kathleen A. Curran et al.   METABOLIC ENGINEERING

Metabolic engineering of Escherichia coli for (2S)-pinocembrin production from glucose by a modular metabolic strategy

(2012) Junjun Wu et al.   METABOLIC ENGINEERING

ePathBrick: A Synthetic Biology Platform for Engineering Metabolic Pathways in E. coli

(2012) Peng Xu et al.   ACS Synthetic Biology

Compound toxicity screening and structure-activity relationship modeling in Escherichia coli

(2011) Anne-Gaëlle Planson et al.   BIOTECHNOLOGY AND BIOENGINEERING

A retrosynthetic biology approach to metabolic pathway design for therapeutic production

(2011) Pablo Carbonell et al.   BMC Systems Biology

Optimization of a heterologous pathway for the production of flavonoids from glucose

(2011) Christine Nicole S. Santos et al.   METABOLIC ENGINEERING

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2011) R. Caspi et al.   NUCLEIC ACIDS RESEARCH

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Molecular signatures-based prediction of enzyme promiscuity

(2010) Pablo Carbonell et al.   BIOINFORMATICS

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models

(2010) Chen Li et al.   BMC Systems Biology

RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media

(2010) T. M. Conrad et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biosynthesis and biotechnological production of flavanones: current state and perspectives

(2009) Zachary L. Fowler et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Transcripts encoding the nanovirus master replication initiator proteins are terminally redundant

(2008) I. Grigoras et al.   JOURNAL OF GENERAL VIROLOGY

Strain Improvement of RecombinantEscherichia colifor Efficient Production of Plant Flavonoids

(2008) Effendi Leonard et al.   MOLECULAR PHARMACEUTICS