Strong influence of periodic boundary conditions on lateral diffusion in lipid bilayer membranes

Methodologies for the analysis of instantaneous lipid diffusion in md simulations of large membrane systems

(2014) Matthieu Chavent et al.   FARADAY DISCUSSIONS

Calculating hydrodynamic interactions for membrane-embedded objects

(2014) Ehsan Noruzifar et al.   JOURNAL OF CHEMICAL PHYSICS

Fluctuating hydrodynamics of multicomponent membranes with embedded proteins

(2014) Brian A. Camley et al.   JOURNAL OF CHEMICAL PHYSICS

Hydrodynamic interaction between overlapping domains during recurrence of registration within planar lipid bilayer membranes

(2014) Tao Han et al.   PHYSICAL REVIEW E

Diffusion coefficients in leaflets of bilayer membranes

(2014) Kazuhiko Seki et al.   PHYSICAL REVIEW E

Measuring Lipid Membrane Viscosity Using Rotational and Translational Probe Diffusion

(2014) Tristan T. Hormel et al.   PHYSICAL REVIEW LETTERS

Diffusion in phospholipid bilayer membranes: dual-leaflet dynamics and the roles of tracer-leaflet and inter-leaflet coupling

(2014) R. J. Hill et al.   PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

Quantifying the Diffusion of Membrane Proteins and Peptides in Black Lipid Membranes with 2-Focus Fluorescence Correlation Spectroscopy

(2013) Kerstin Weiß et al.   BIOPHYSICAL JOURNAL

New faster CHARMM molecular dynamics engine

(2013) Antti-Pekka Hynninen et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Membrane Viscosity Determined from Shear-Driven Flow in Giant Vesicles

(2013) Aurelia R. Honerkamp-Smith et al.   PHYSICAL REVIEW LETTERS

Diffusion of complex objects embedded in free and supported lipid bilayer membranes: role of shape anisotropy and leaflet structure

(2013) Brian A. Camley et al.   Soft Matter

Contributions to membrane-embedded-protein diffusion beyond hydrodynamic theories

(2012) Brian A. Camley et al.   PHYSICAL REVIEW E

Translational and rotational diffusion of micrometer-sized solid domains in lipid membranes

(2012) Eugene P. Petrov et al.   Soft Matter

Perturbative path-integral study of active- and passive-tracer diffusion in fluctuating fields

(2011) Vincent Démery et al.   PHYSICAL REVIEW E

Beyond the creeping viscous flow limit for lipid bilayer membranes: Theory of single-particle microrheology, domain flicker spectroscopy, and long-time tails

(2011) Brian A. Camley et al.   PHYSICAL REVIEW E

Mobility in geometrically confined membranes

(2011) Y. A. Domanov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lipid Bilayer Domain Fluctuations as a Probe of Membrane Viscosity

(2010) Brian A. Camley et al.   BIOPHYSICAL JOURNAL

Single Molecule Diffusion of Membrane-Bound Proteins: Window into Lipid Contacts and Bilayer Dynamics

(2010) Jefferson D. Knight et al.   BIOPHYSICAL JOURNAL

Variation of the Lateral Mobility of Transmembrane Peptides with Hydrophobic Mismatch

(2010) Yann Gambin et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types

(2010) Jeffery B. Klauda et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Correlated Diffusion of Membrane Proteins and Their Effect on Membrane Viscosity

(2009) Naomi Oppenheimer et al.   BIOPHYSICAL JOURNAL

Determining the Local Shear Viscosity of a Lipid Bilayer System by Reverse Non-Equilibrium Molecular Dynamics Simulations

(2009) Thomas J. Müller et al.   CHEMPHYSCHEM

Concerted diffusion of lipids in raft-like membranes

(2009) Touko Apajalahti et al.   FARADAY DISCUSSIONS

CHARMM: The biomolecular simulation program

(2009) B. R. Brooks et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Lateral Diffusion of Membrane Proteins

(2009) Sivaramakrishnan Ramadurai et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Subdiffusion and lateral diffusion coefficient of lipid atoms and molecules in phospholipid bilayers

(2009) Elijah Flenner et al.   PHYSICAL REVIEW E

Two-Dimensional to Three-Dimensional Transition in Soap Films Demonstrated by Microrheology

(2009) V. Prasad et al.   PHYSICAL REVIEW LETTERS

Hybrid Elastic and Discrete-Particle Approach to Biomembrane Dynamics with Application to the Mobility of Curved Integral Membrane Proteins

(2009) Ali Naji et al.   PHYSICAL REVIEW LETTERS

Coarse-grained simulation: a high-throughput computational approach to membrane proteins

(2008) Mark S.P. Sansom et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Translational Diffusion in Lipid Membranes beyond the Saffman-Delbrück Approximation

(2008) Eugene P. Petrov et al.   BIOPHYSICAL JOURNAL

The MARTINI Coarse-Grained Force Field: Extension to Proteins

(2008) Luca Monticelli et al.   Journal of Chemical Theory and Computation

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation