Methodologies for the analysis of instantaneous lipid diffusion in md simulations of large membrane systems
出版年份 2014 全文链接
标题
Methodologies for the analysis of instantaneous lipid diffusion in md simulations of large membrane systems
作者
关键词
-
出版物
FARADAY DISCUSSIONS
Volume 169, Issue -, Pages 455-475
出版商
Royal Society of Chemistry (RSC)
发表日期
2014-02-21
DOI
10.1039/c3fd00145h
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- NRas slows the rate at which a model lipid bilayer phase separates
- (2014) Elizabeth Jefferys et al. FARADAY DISCUSSIONS
- Molecular dynamics study of lipid bilayers modeling the plasma membranes of normal murine thymocytes and leukemic GRSL cells
- (2013) Yoshimichi Andoh et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Perspective on the Martini model
- (2013) Siewert J. Marrink et al. CHEMICAL SOCIETY REVIEWS
- Probing microscopic material properties inside simulated membranes through spatially resolved three-dimensional local pressure fields and surface tensions
- (2013) Peter M. Kasson et al. CHEMISTRY AND PHYSICS OF LIPIDS
- Influence of lipids on protein-mediated transmembrane transport
- (2013) Elizabeth J. Denning et al. CHEMISTRY AND PHYSICS OF LIPIDS
- 2012 IEEE Visualization Contest Winner: Visualizing Polarization Domains in Barium Titanate
- (2013) Katrin Scharnowski et al. IEEE COMPUTER GRAPHICS AND APPLICATIONS
- APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories
- (2013) Gunther Lukat et al. Journal of Chemical Information and Modeling
- Derivation and assessment of phase-shifted, disordered vector field models for frustrated solvent interactions
- (2013) Jeffrey K. Weber et al. JOURNAL OF CHEMICAL PHYSICS
- Anomalous viscosity effect in the early stages of the ion-assisted adhesion/fusion event between lipid bilayers: A theoretical and computational study
- (2013) Antonio Raudino et al. JOURNAL OF CHEMICAL PHYSICS
- Functional understanding of solvent structure in GroEL cavity through dipole field analysis
- (2013) Jeffrey K. Weber et al. JOURNAL OF CHEMICAL PHYSICS
- Computational analysis of local membrane properties
- (2013) Vytautas Gapsys et al. JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN
- Phase Separation in a Lipid/Cholesterol System: Comparison of Coarse-Grained and United-Atom Simulations
- (2013) Davit Hakobyan et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Dynamic implicit-solvent coarse-grained models of lipid bilayer membranes: Fluctuating hydrodynamics thermostat
- (2013) Yaohong Wang et al. PHYSICAL REVIEW E
- Collective Intermolecular Motions Dominate the Picosecond Dynamics of Short Polymer Chains
- (2013) Humphrey Morhenn et al. PHYSICAL REVIEW LETTERS
- Membrane Viscosity Determined from Shear-Driven Flow in Giant Vesicles
- (2013) Aurelia R. Honerkamp-Smith et al. PHYSICAL REVIEW LETTERS
- Reduced Lateral Mobility of Lipids and Proteins in Crowded Membranes
- (2013) Joseph E. Goose et al. PLoS Computational Biology
- Molecular Structure of Membrane Tethers
- (2012) Svetlana Baoukina et al. BIOPHYSICAL JOURNAL
- Anomalous and normal diffusion of proteins and lipids in crowded lipid membranes
- (2012) Matti Javanainen et al. FARADAY DISCUSSIONS
- Quantitative analysis of the lipidomes of the influenza virus envelope and MDCK cell apical membrane
- (2012) Mathias J. Gerl et al. JOURNAL OF CELL BIOLOGY
- Patchwork organization of the yeast plasma membrane into numerous coexisting domains
- (2012) Felix Spira et al. NATURE CELL BIOLOGY
- Characterization of the motion of membrane proteins using high-speed atomic force microscopy
- (2012) Ignacio Casuso et al. Nature Nanotechnology
- Structure of the yeast F1Fo-ATP synthase dimer and its role in shaping the mitochondrial cristae
- (2012) K. M. Davies et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- GPU-powered tools boost molecular visualization
- (2011) M. Chavent et al. BRIEFINGS IN BIOINFORMATICS
- Mayavi: 3D Visualization of Scientific Data
- (2011) Prabhu Ramachandran et al. COMPUTING IN SCIENCE & ENGINEERING
- Curvature, rigidity, and pattern formation in functional polymer micelles and vesicles – From dynamic visualization to molecular simulation
- (2011) Sharon M. Loverde et al. CURRENT OPINION IN SOLID STATE & MATERIALS SCIENCE
- An RBF-Based Reparameterization Method for Constrained Texture Mapping
- (2011) Hongchuan Yu et al. IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS
- MDAnalysis: A toolkit for the analysis of molecular dynamics simulations
- (2011) Naveen Michaud-Agrawal et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Lipid Simulations: A Perspective on Lipids in Action
- (2011) I. Vattulainen et al. Cold Spring Harbor Perspectives in Biology
- Tracking the Flow of Water through Photosystem II Using Molecular Dynamics and Streamline Tracing
- (2010) Serguei Vassiliev et al. BIOCHEMISTRY
- The influence of additives on the nanoscopic dynamics of the phospholipid dimyristoylphosphatidylcholine
- (2010) Sebastian Busch et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Multiscale Computer Simulation of the Immature HIV-1 Virion
- (2010) Gary S. Ayton et al. BIOPHYSICAL JOURNAL
- Membrane Proteins Diffuse as Dynamic Complexes with Lipids
- (2010) Perttu S. Niemelä et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Molecular Mechanism of Long-Range Diffusion in Phospholipid Membranes Studied by Quasielastic Neutron Scattering
- (2010) Sebastian Busch et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Free Volume Theory Applied to Lateral Diffusion in Langmuir Monolayers: Atomistic Simulations for a Protein-Free Model of Lung Surfactant
- (2010) Matti Javanainen et al. LANGMUIR
- Visualizing biological data—now and in the future
- (2010) Seán I O'Donoghue et al. NATURE METHODS
- Release of content through mechano-sensitive gates in pressurized liposomes
- (2010) M. Louhivuori et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Concerted diffusion of lipids in raft-like membranes
- (2009) Touko Apajalahti et al. FARADAY DISCUSSIONS
- PACKMOL: A package for building initial configurations for molecular dynamics simulations
- (2009) L. Martínez et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Molecular Dynamics Simulation Study of Correlated Motions in Phospholipid Bilayer Membranes
- (2009) Matthew Roark et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Coarse-Grained Molecular Dynamics Simulations of the Energetics of Helix Insertion into a Lipid Bilayer†
- (2008) Peter J. Bond et al. BIOCHEMISTRY
- Lipids on the move: Simulations of membrane pores, domains, stalks and curves
- (2008) Siewert J. Marrink et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Ordering effects of cholesterol and its analogues
- (2008) Tomasz Róg et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Molecular Simulations of Lipid-Mediated Protein-Protein Interactions
- (2008) Frédérick Jean-Marie de Meyer et al. BIOPHYSICAL JOURNAL
- Membrane proteins: molecular dynamics simulations
- (2008) E LINDAHL et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- The MARTINI Coarse-Grained Force Field: Extension to Proteins
- (2008) Luca Monticelli et al. Journal of Chemical Theory and Computation
- GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
- (2008) Berk Hess et al. Journal of Chemical Theory and Computation
- Direct observation of the nanoscale dynamics of membrane lipids in a living cell
- (2008) Christian Eggeling et al. NATURE
- Progressive ordering with decreasing temperature of the phospholipids of influenza virus
- (2008) Ivan V Polozov et al. Nature Chemical Biology
- Lateral Diffusion in Lipid Membranes through Collective Flows
- (2007) Emma Falck et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now